RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 JAM3Q9BX67 310 aa12.92□□□□□ -0.34
RTF1-201ENST00000389629 MRPL22Q9NWU5 206 aaKnown RBP12.92□□□□□ -0.34
RTF1-201ENST00000389629 OR2W5A6NFC9 320 aa12.92□□□□□ -0.34
RTF1-201ENST00000389629 VSIG10L2P0DP72 767 aa12.92□□□□□ -0.34
RTF1-201ENST00000389629 DHPSP49366 369 aaPredicted RBP12.92□□□□□ -0.34
RTF1-201ENST00000389629 MRPS34P82930 218 aaKnown RBP12.92□□□□□ -0.34
RTF1-201ENST00000389629 MLF2Q15773 248 aaPredicted RBP12.92□□□□□ -0.34
RTF1-201ENST00000389629 PHLDA2Q53GA4 152 aa12.92□□□□□ -0.34
RTF1-201ENST00000389629 FAM57BQ71RH2 274 aa12.92□□□□□ -0.34
RTF1-201ENST00000389629 MMP26Q9NRE1 261 aa12.92□□□□□ -0.34
RTF1-201ENST00000389629 SLC7A11Q9UPY5 501 aa12.92□□□□□ -0.34
RTF1-201ENST00000389629 hCG_1809904A0A1W2PP81 198 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 A0A1W2PR64 198 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 A0A1W2PRV1 198 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 CTDSPLO15194 276 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 NUDT21O43809 227 aaKnown RBP12.91□□□□□ -0.34
RTF1-201ENST00000389629 SEMA7AO75326 666 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 NXPH3O95157 252 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 ARG1P05089 322 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 CEACAM5P06731 702 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 SFTPDP35247 375 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 LSRQ86X29 649 aaPredicted RBP12.91□□□□□ -0.34
RTF1-201ENST00000389629 SKA3Q8IX90 412 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 LILRB2Q8N423 598 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 KCNG3Q8TAE7 436 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 ADAMTS18Q8TE60 1221 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 CMTM3Q96MX0 182 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 LRFN5Q96NI6 719 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 SUCNR1Q9BXA5 334 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 FKRPQ9H9S5 495 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 CENPVL1A0A0U1RR11 272 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 TMEM229AB2RXF0 380 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 JTBO76095 146 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 RPL18Q07020 188 aaKnown RBP12.91□□□□□ -0.34
RTF1-201ENST00000389629 MFGE8Q08431 387 aaPredicted RBP12.91□□□□□ -0.34
RTF1-201ENST00000389629 MPPED2Q15777 294 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 OGFOD3Q6PK18 319 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 SHISA6Q6ZSJ9 500 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 MRPS24Q96EL2 167 aaKnown RBP12.91□□□□□ -0.34
RTF1-201ENST00000389629 ZNF160Q9HCG1 818 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 SLC17A2O00624 439 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 SCAF4O95104 1147 aaKnown RBP12.91□□□□□ -0.34
RTF1-201ENST00000389629 UTS2O95399 124 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 PTGFRP43088 359 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 FCRL6Q6DN72 434 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 ANKRD16Q6P6B7 361 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 RFLNBQ8N5W9 214 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 CCDC74AQ96AQ1 378 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 NRSN2Q9GZP1 204 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 CRLF2Q9HC73 371 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 ZNF239Q16600 458 aaKnown RBP12.91□□□□□ -0.34
RTF1-201ENST00000389629 SECTM1Q8WVN6 248 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 BADQ92934 168 aa12.91□□□□□ -0.34
RTF1-201ENST00000389629 GREM1O60565 184 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 OR1D4P47884 311 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 RPL23AP62750 156 aaKnown RBP12.9□□□□□ -0.34
RTF1-201ENST00000389629 FUT5Q11128 374 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 ARL6IP1Q15041 203 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 OR5M8Q8NGP6 311 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 AKR7LQ8NHP1 331 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 KCNS2Q9ULS6 477 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 GAB2Q9UQC2 676 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 EEF1A1P68104 462 aaKnown RBP12.9□□□□□ -0.34
RTF1-201ENST00000389629 RPUSD3Q6P087 351 aaKnown RBP12.9□□□□□ -0.34
RTF1-201ENST00000389629 IL34Q6ZMJ4 242 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 ZNF595Q8IYB9 648 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 CCDC71LQ8N9Z2 235 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 TMEM229BQ8NBD8 167 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 OR1S1Q8NH92 325 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 HHIPQ96QV1 700 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 RASL12Q9NYN1 266 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 GP1BAP07359 652 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 FBLP22087 321 aaKnown RBP12.9□□□□□ -0.34
RTF1-201ENST00000389629 INPP5JQ15735 1006 aaPredicted RBP12.9□□□□□ -0.34
RTF1-201ENST00000389629 ALKBH2Q6NS38 261 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 PRRG4Q9BZD6 226 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 FAM86C1Q9NVL1 165 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 A0A1W2PPH5 198 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 A6NIZ1 184 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 ZNF724A8MTY0 619 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 XRCC2O43543 280 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 WNT11O96014 354 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 ZGLP1P0C6A0 271 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 RPS2P15880 293 aaKnown RBP12.9□□□□□ -0.34
RTF1-201ENST00000389629 ZP1P60852 638 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 RAP1BP61224 184 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 TCTN1Q2MV58 587 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 PRSS41Q7RTY9 318 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 UEVLDQ8IX04 471 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 OR2G3Q8NGZ4 309 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 PRR13Q9NZ81 148 aa12.9□□□□□ -0.34
RTF1-201ENST00000389629 TRBV23-1A0A0A0MS06 115 aa12.89□□□□□ -0.35
RTF1-201ENST00000389629 A6NLC8 198 aa12.89□□□□□ -0.35
RTF1-201ENST00000389629 YKT6O15498 198 aa12.89□□□□□ -0.35
RTF1-201ENST00000389629 CYB5BO43169 146 aa12.89□□□□□ -0.35
RTF1-201ENST00000389629 CD96P40200 585 aa12.89□□□□□ -0.35
RTF1-201ENST00000389629 RPS18P62269 152 aaKnown RBP12.89□□□□□ -0.35
RTF1-201ENST00000389629 RIN1Q13671 783 aa12.89□□□□□ -0.35
RTF1-201ENST00000389629 ZDHHC12Q96GR4 267 aa12.89□□□□□ -0.35
RTF1-201ENST00000389629 RBM24Q9BX46 236 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms