RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 LYVE1Q9Y5Y7 322 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 RAC2P15153 192 aa18.37■□□□□ 0.53
CCDC28B-201ENST00000373602 NOS3P29474 1203 aa18.37■□□□□ 0.53
CCDC28B-201ENST00000373602 Q6ZR03 302 aa18.37■□□□□ 0.53
CCDC28B-201ENST00000373602 SLC26A10Q8NG04 563 aa18.37■□□□□ 0.53
CCDC28B-201ENST00000373602 RPRD1BQ9NQG5 326 aaKnown RBP18.37■□□□□ 0.53
CCDC28B-201ENST00000373602 TANC2Q9HCD6 1990 aa18.37■□□□□ 0.53
CCDC28B-201ENST00000373602 STAB1Q9NY15 2570 aa18.37■□□□□ 0.53
CCDC28B-201ENST00000373602 OR6C68A6NDL8 312 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 PLPP2O43688 288 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 TNFSF4P23510 183 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 MAGEA2P43356 314 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 ERFP50548 548 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 DBPQ10586 325 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 LIPNQ5VXI9 398 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 CORO6Q6QEF8 472 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 ARHGAP24Q8N264 748 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 LINC00471Q8N535 108 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 OR2Z1Q8NG97 314 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 OR5L1Q8NGL2 311 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 APOBEC3DQ96AK3 386 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 NSL1Q96IY1 281 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 TRIM15Q9C019 465 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 G6PC2Q9NQR9 355 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 METRNQ9UJH8 293 aa18.36■□□□□ 0.53
CCDC28B-201ENST00000373602 TCRBV5S2A0A599 114 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 TNFRSF11BO00300 401 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 TNFRSF1AP19438 455 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 SLC36A3Q495N2 470 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 RPL13AP3Q6NVV1 102 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 FAHD2BQ6P2I3 314 aaPredicted RBP18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 FBXW12Q6X9E4 464 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 PEG10Q86TG7 708 aaKnown RBP18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 SDR9C7Q8NEX9 313 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 OR9Q2Q8NGE9 314 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 OR52E2Q8NGJ4 325 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 OR4C15Q8NGM1 316 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 FAHD2AQ96GK7 314 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 GAL3ST1Q99999 423 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 BTBD10Q9BSF8 475 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 C19orf24Q9BVV8 132 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 REPIN1Q9BWE0 567 aaKnown RBP18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 MUC13Q9H3R2 512 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 EGLN3Q9H6Z9 239 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 CDH10Q9Y6N8 788 aa18.35■□□□□ 0.53
CCDC28B-201ENST00000373602 TCF21O43680 179 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 PNPP00491 289 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 HLXQ14774 488 aaPredicted RBP18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 RSPO1Q2MKA7 263 aaPredicted RBP18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 KRTAP27-1Q3LI81 207 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 CLEC12AQ5QGZ9 265 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 SLC35F1Q5T1Q4 408 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 ZNF770Q6IQ21 691 aaPredicted RBP18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 LCN8Q6JVE9 175 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 SLC18B1Q6NT16 456 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 DDOQ99489 341 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 FN3KQ9H479 309 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 MAGIXQ9H6Y5 334 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 METTL17Q9H7H0 456 aaPredicted RBP18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 TMEM106BQ9NUM4 274 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 DCAF16Q9NXF7 216 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 IL20Q9NYY1 176 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 PTTG3PQ9NZH4 202 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 IL19Q9UHD0 177 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 NPTNQ9Y639 398 aa18.34■□□□□ 0.53
CCDC28B-201ENST00000373602 ISPDA4D126 451 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 BHLHE40O14503 412 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 GGT2P36268 569 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 HNRNPA0Q13151 305 aaKnown RBP18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 TRIM25Q14258 630 aaKnown RBP18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 CFAP77Q6ZQR2 320 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 COLCA1Q6ZS62 124 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 DHFR2Q86XF0 187 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 LINC00346Q8IVM7 164 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 ZNF283Q8N7M2 679 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 OR52L1Q8NGH7 329 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 ITLN1Q8WWA0 313 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 CYB5R1Q9UHQ9 305 aa18.33■□□□□ 0.52
CCDC28B-201ENST00000373602 SURF4O15260 269 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 CCNB2O95067 398 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 FAM107AO95990 144 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 GASTP01350 101 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 IGHV2-70P01814 119 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 CALB2P22676 271 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 MS4A2Q01362 244 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 ECH1Q13011 328 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 OR2T2Q6IF00 324 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 SHQ1Q6PI26 577 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 C1orf229Q6ZS94 237 aaPredicted RBP18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 RASSF6Q6ZTQ3 369 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 OR5AS1Q8N127 324 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 OR8G5Q8NG78 346 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 OR2AJ1Q8NGZ0 328 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 OR2V2Q96R30 315 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 PITX2Q99697 317 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 CDADC1Q9BWV3 514 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 PLA2G12AQ9BZM1 189 aa18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 PNRC2Q9NPJ4 139 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-201ENST00000373602 MRPL22Q9NWU5 206 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms