RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 VWA2Q5GFL6 755 aa10.4□□□□□ -0.75
PTPRF-203ENST00000372407 CORO6Q6QEF8 472 aa10.4□□□□□ -0.75
PTPRF-203ENST00000372407 TFAP2EQ6VUC0 442 aa10.4□□□□□ -0.75
PTPRF-203ENST00000372407 FBXL6Q8N531 539 aa10.4□□□□□ -0.75
PTPRF-203ENST00000372407 OR10Z1Q8NGY1 313 aa10.4□□□□□ -0.75
PTPRF-203ENST00000372407 OR2G2Q8NGZ5 317 aa10.4□□□□□ -0.75
PTPRF-203ENST00000372407 ARSGQ96EG1 525 aa10.4□□□□□ -0.75
PTPRF-203ENST00000372407 A0A087WZY1 265 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 BTBD17A6NE02 478 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 EIF4EP06730 217 aaKnown RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 HLA-DOBP13765 273 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 RPA2P15927 270 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 S100A7P31151 101 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 BTG2P78543 158 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 THEM4Q5T1C6 240 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 STAC2Q6ZMT1 411 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SLC38A9Q8NBW4 561 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 OR51H1Q8NH63 302 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SMIM4Q8WVI0 70 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 EMG1Q92979 244 aaKnown RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 TXNIPQ9H3M7 391 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 PLK3Q9H4B4 646 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 CDCP1Q9H5V8 836 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 WSB2Q9NYS7 404 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 CTSFQ9UBX1 484 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SH3BGRL2Q9UJC5 107 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 YBX2Q9Y2T7 364 aaKnown RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 PCYT1BQ9Y5K3 369 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SLCO1B1Q9Y6L6 691 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 PRSS37A4D1T9 235 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SCGB1D1O95968 90 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 EPXP11678 715 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 DUSP1P28562 367 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 HOXA1P49639 335 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SELENBP1Q13228 472 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 ADIRFQ15847 76 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 TMEM71Q6P5X7 295 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 CCDC71Q8IV32 467 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 CA13Q8N1Q1 262 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 ZNF439Q8NDP4 499 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 BHLHE23Q8NDY6 225 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 BCL7CQ8WUZ0 217 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 HPSE2Q8WWQ2 592 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SLC22A11Q9NSA0 550 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 COLQQ9Y215 455 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 M0R135 149 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 F10P00742 488 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 CD3DP04234 171 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 ADRA2CP18825 462 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 EDDM3BP56851 147 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 B4GALNT1Q00973 533 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 RUNX2Q13950 521 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SLC17A1Q14916 467 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 CCDC190Q86UF4 302 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 CCL4L1Q8NHW4 92 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 C14orf79Q96F83 325 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 ZNF799Q96GE5 643 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SLIRPQ9GZT3 109 aaKnown RBP10.39□□□□□ -0.75
PTPRF-203ENST00000372407 GPR84Q9NQS5 396 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 SLC22A13Q9Y226 551 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 FLVCR1Q9Y5Y0 555 aa10.39□□□□□ -0.75
PTPRF-203ENST00000372407 ZFP92A6NM28 416 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 CLN5O75503 358 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 CEACAM5P06731 702 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 CD80P33681 288 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.38□□□□□ -0.75
PTPRF-203ENST00000372407 TOR2AQ5JU69 321 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 PLXDC2Q6UX71 529 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 OR52H1Q8NGJ2 320 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 NUDCD2Q8WVJ2 157 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 JAM3Q9BX67 310 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 GPR173Q9NS66 373 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 ANKRD10Q9NXR5 420 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 IL20Q9NYY1 176 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 C20orf202A1L168 122 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 DEGS1O15121 323 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 ACKR3P25106 362 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 PNLIPRP2P54317 469 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 FAM27D1Q5T7N8 215 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 FAM199XQ6PEV8 388 aaPredicted RBP10.38□□□□□ -0.75
PTPRF-203ENST00000372407 KIRREL2Q6UWL6 708 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.38□□□□□ -0.75
PTPRF-203ENST00000372407 BAP18Q8IXM2 172 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 C15orf54Q8N8G6 183 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 OR52N5Q8NH56 324 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 OR10J5Q8NHC4 309 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 PTDSS2Q9BVG9 487 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 SLC25A32Q9H2D1 315 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 FLVCR2Q9UPI3 526 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 SLC5A6Q9Y289 635 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 A0A0B4J203 849 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 CXorf51AA0A1B0GTR3 108 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 C4orf47A7E2U8 309 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 DSCR3O14972 297 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 NDUFA6P56556 154 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 HTRA4P83105 476 aaPredicted RBP10.38□□□□□ -0.75
PTPRF-203ENST00000372407 KIAA0141Q14154 515 aaPredicted RBP10.38□□□□□ -0.75
PTPRF-203ENST00000372407 CDH26Q8IXH8 852 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 MORN4Q8NDC4 146 aa10.38□□□□□ -0.75
PTPRF-203ENST00000372407 APH1BQ8WW43 257 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms