RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ELMOD2Q8IZ81 293 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 GPR137CQ8N3F9 429 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF433Q8N7K0 673 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 SAMD12Q8N8I0 201 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 DNAAF1Q8NEP3 725 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 CCDC32Q9BV29 185 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 PBOV1Q9GZY1 135 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 EXO5Q9H790 373 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 BCO1Q9HAY6 547 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 GPR35Q9HC97 309 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 TCF7L1Q9HCS4 588 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 PAQR5Q9NXK6 330 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF319Q9P2F9 582 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 MALT1Q9UDY8 824 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 SSUH2Q9Y2M2 353 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 NOSIPQ9Y314 301 aaKnown RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 TFECO14948 347 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 IGHV3-9P01782 118 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 IGHG3P01860 377 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 SLC2A1P11166 492 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 ACHEP22303 614 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 GUCA1AP43080 201 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 OXA1LQ15070 435 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 CEACAM16Q2WEN9 425 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 HES5Q5TA89 166 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 KLHL24Q6TFL4 600 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 PRSS45Q7RTY3 260 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 CYSLTR2Q9NS75 346 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 NUFIP1Q9UHK0 495 aaKnown RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 DHDHQ9UQ10 334 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 SLC5A6Q9Y289 635 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 V9GY05 133 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 ACACAQ13085 2346 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 hCG_2014768A0A024R1R8 64 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 C5orf63A6NC05 138 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 E9PLN8 166 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 AIPO00170 330 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 PDCD5O14737 125 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 ZNHIT1O43257 154 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 SLC19A2O60779 497 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 TGM6O95932 706 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 PDGFAP04085 211 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 MAS1P04201 325 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 B4GALT1P15291 398 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 HSD11B1P28845 292 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF121P58317 390 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-202ENST00000372405 XKRXQ6PP77 449 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF704Q6ZNC4 412 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-202ENST00000372405 GJC3Q8NFK1 279 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 CALHM2Q9HA72 323 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 SLC7A10Q9NS82 523 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 HHLA2Q9UM44 414 aa12.11□□□□□ -0.47
PTPRF-202ENST00000372405 A0A1B0GTI1 187 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 A0A1B0GVC2 190 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 A6NIN4 97 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF724A8MTY0 619 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 MRPL33O75394 65 aaKnown RBP12.1□□□□□ -0.47
PTPRF-202ENST00000372405 UBCP0CG48 685 aaKnown RBP12.1□□□□□ -0.47
PTPRF-202ENST00000372405 IGFBP3P17936 291 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-202ENST00000372405 NPR2P20594 1047 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 CTSSP25774 331 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 CX3CR1P49238 355 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 CLDN12P56749 244 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 TAF13Q15543 124 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 IGFL3Q6UXB1 125 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 NAA40Q86UY6 237 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 LRRC28Q86X40 367 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-202ENST00000372405 DTX3Q8N9I9 347 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 OR4M1Q8NGD0 313 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 LGALS14Q8TCE9 139 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 SLC7A6Q92536 515 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 TAAR6Q96RI8 345 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 FOXB1Q99853 325 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 SOX7Q9BT81 388 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 SLCO5A1Q9H2Y9 848 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 NIPAL2Q9H841 368 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 RNF122Q9H9V4 155 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 EMC3Q9P0I2 261 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 ABRACLQ9P1F3 81 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 BSNQ9UPA5 3926 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 ISPDA4D126 451 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 FAM25AB3EWG3 89 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 FAM25CB3EWG5 89 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 FAM25GB3EWG6 89 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 K7EM74 188 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 CSF3P09919 207 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 IL7P13232 177 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 GRB2P62993 217 aaKnown RBP12.1□□□□□ -0.47
PTPRF-202ENST00000372405 GALK2Q01415 458 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 TMEM244Q5VVB8 128 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 METAP1DQ6UB28 335 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-202ENST00000372405 OR8H2Q8N162 312 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 OR8B12Q8NGG6 310 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 OR13C3Q8NGS6 347 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 FGFBP3Q8TAT2 258 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 THRSPQ92748 146 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 PRRG4Q9BZD6 226 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 LINC00470Q9BZP3 86 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 SLITRK2Q9H156 845 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 TAS2R4Q9NYW5 299 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms