RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SIGLEC11Q96RL6 698 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 JAM3Q9BX67 310 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 PTRH2Q9Y3E5 179 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 RP1P56715 2156 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 LEUTXA8MZ59 168 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 FGF17O60258 216 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 KIAA0040Q15053 153 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 GSG1Q2KHT4 349 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 PHYHD1Q5SRE7 291 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 OR2W3Q7Z3T1 314 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 KCNJ15Q99712 375 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 PIGQQ9BRB3 760 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 LYRM4Q9HD34 91 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 PCBP4P57723 403 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 FBXO46Q6PJ61 603 aaPredicted RBP17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 DBX2Q6ZNG2 339 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 ZFPM2Q8WW38 1151 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 IL20Q9NYY1 176 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 MRPL33O75394 65 aaKnown RBP17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 GPR85P60893 370 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 CLEC12BQ2HXU8 276 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 LRIT1Q9P2V4 623 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 LRP3O75074 770 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 CLN5O75503 358 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 TIMP1P01033 207 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 HABP2Q14520 560 aaPredicted RBP17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 SMUG1Q53HV7 270 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 TMPRSS7Q7RTY8 843 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 FAM185AQ8N0U4 392 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 LIPHQ8WWY8 451 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 BCO1Q9HAY6 547 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 OBP2BQ9NPH6 170 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 GNG12Q9UBI6 72 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 TUBGCP6Q96RT7 1819 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 H3BNC9 293 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 TGOLN2O43493 480 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 TBPP20226 339 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 OPRM1P35372 400 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 SLC35A1P78382 337 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 RPL18Q07020 188 aaKnown RBP17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 GJC3Q8NFK1 279 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 WBP2Q969T9 261 aa17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 CNRIP1Q96F85 164 aaPredicted RBP17.77■□□□□ 0.44
CCDC88B-202ENST00000356786 PXNP49023 591 aaPredicted RBP17.77■□□□□ 0.43
CCDC88B-202ENST00000356786 TGFBR3Q03167 851 aa17.77■□□□□ 0.43
CCDC88B-202ENST00000356786 GRINAQ7Z429 371 aa17.77■□□□□ 0.43
CCDC88B-202ENST00000356786 TRAF4Q9BUZ4 470 aaPredicted RBP17.77■□□□□ 0.43
CCDC88B-202ENST00000356786 TINAGL1Q9GZM7 467 aaPredicted RBP17.77■□□□□ 0.43
CCDC88B-202ENST00000356786 KCNG2Q9UJ96 466 aa17.77■□□□□ 0.43
CCDC88B-202ENST00000356786 RPH3ALQ9UNE2 315 aa17.77■□□□□ 0.43
CCDC88B-202ENST00000356786 CBY1Q9Y3M2 126 aa17.77■□□□□ 0.43
CCDC88B-202ENST00000356786 SFTA3P0C7M3 94 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 DRD1P21728 446 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 GDF1P27539 372 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 RAB13P51153 203 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 DOK3Q7L591 496 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 CAMKMTQ7Z624 323 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 RPUSD4Q96CM3 377 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 ABHD1Q96SE0 405 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 RYDENQ9NUL5 291 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 C2orf72A6NCS6 295 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 HSD17B6O14756 317 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 XRCC2O43543 280 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 IGLV3-27P01718 113 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 WNT3P56703 355 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 EGR3Q06889 387 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 PLGLAQ15195 96 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 TMEM201Q5SNT2 666 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 SKA3Q8IX90 412 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 DND1Q8IYX4 353 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 EXD3Q8N9H8 876 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 RLN3Q8WXF3 142 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 HEYLQ9NQ87 328 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 TMEM184BQ9Y519 407 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 THBS3P49746 956 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 IFITM3Q01628 133 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 NR0B2Q15466 257 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 EMC4Q5J8M3 183 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 SLC38A9Q8NBW4 561 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 LHX4Q969G2 390 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 CTSFQ9UBX1 484 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 AKR7A3O95154 331 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 PEX11BO96011 259 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 AARDQ4LEZ3 155 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 ZNF628Q5EBL2 1059 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 TMEM18Q96B42 140 aa17.76■□□□□ 0.43
CCDC88B-202ENST00000356786 RRASP10301 218 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 SLC6A1P30531 599 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 GRB2P62993 217 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 IGSF11Q5DX21 431 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 OR4S1Q8NGB4 309 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 SLAMF6Q96DU3 332 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 LINC00052Q96N35 136 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 PLEKHF2Q9H8W4 249 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 CDK5RAP2Q96SN8 1893 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 TMEM52BQ4KMG9 183 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 IL34Q6ZMJ4 242 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 SLC38A6Q8IZM9 456 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 FAM3CQ92520 227 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 MAP3K3Q99759 626 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms