RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 C2orf78A6NCI8 922 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 CFDP00746 253 aaPredicted RBP3.24□□□□□ -1.89
SYNE1-201ENST00000341594 PHYHD1Q5SRE7 291 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 LMAN1LQ9HAT1 526 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 FAM206AQ9NX38 181 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 SLC22A7Q9Y694 548 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 TLN1Q9Y490 2541 aaKnown RBP3.24□□□□□ -1.89
SYNE1-201ENST00000341594 RHOQP17081 205 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF136P52737 540 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 SPCS3P61009 180 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 APOOLQ6UXV4 268 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 NUDT10Q8NFP7 164 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 OR10D4PQ8NGN7 298 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 ZG16BQ96DA0 208 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 ZCCHC4Q9H5U6 513 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 MMP26Q9NRE1 261 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 XRCC3O43542 346 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 ANXA4P09525 319 aaPredicted RBP3.24□□□□□ -1.89
SYNE1-201ENST00000341594 DRD2P14416 443 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 IFITM3Q01628 133 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 GNMTQ14749 295 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 PROKR1Q8TCW9 393 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 R3HDM4Q96D70 268 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 CWH43Q9H720 699 aa3.24□□□□□ -1.89
SYNE1-201ENST00000341594 IGHV3-20A0A0C4DH32 117 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 A0A1W2PNV4 684 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SUSD5O60279 629 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 AQP6Q13520 282 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 LILRA6Q6PI73 481 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SYS1Q8N2H4 156 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 CD244Q9BZW8 370 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SLC25A19Q9HC21 320 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 YTHDF2Q9Y5A9 579 aaKnown RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 DAPL1A0PJW8 107 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 CPTPQ5TA50 214 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 RAET1LQ5VY80 246 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 TMEM217Q8N7C4 229 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 NEIL3Q8TAT5 605 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 FZD8Q9H461 694 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 LRTM1Q9HBL6 345 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 A0A1W2PPE2 198 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 RPS12P25398 132 aaKnown RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 ST3GAL3Q11203 375 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 MTAPQ13126 283 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 CHIT1Q13231 466 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 TMEM35AQ53FP2 167 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 C1orf185Q5T7R7 199 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SLC17A9Q9BYT1 436 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 PLK3Q9H4B4 646 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 TECRQ9NZ01 308 aaKnown RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 E9PQ18 207 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 NME1P15531 152 aaKnown RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 RBP2P50120 134 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 ERVFRD-1P60508 538 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 PDZK1IP1Q13113 114 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 OR52E2Q8NGJ4 325 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 DCUN1D4Q92564 292 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 MYEOVQ96EZ4 313 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 LYSMD1Q96S90 227 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 INTS14Q96SY0 518 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 CSPG4Q6UVK1 2322 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 MEIKINA0A087WXM9 373 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 A6NDN8 102 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 CYB5BO43169 146 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 OR7C2O60412 319 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 TARBP2Q15633 366 aaKnown RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 EMC4Q5J8M3 183 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 VWA1Q6PCB0 445 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 NUDT11Q96G61 164 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 NKX6-2Q9C056 277 aaPredicted RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 MIOXQ9UGB7 285 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 HIVEP2P31629 2446 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 RBBP9O75884 186 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 ITGB2P05107 769 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 MOGAT2Q3SYC2 334 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SFTA2Q6UW10 78 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SCGB1C1Q8TD33 95 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SLC22A18Q96BI1 424 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 RIF1Q5UIP0 2472 aaKnown RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 KCNE1P15382 129 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF239Q16600 458 aaKnown RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 MBNL2Q5VZF2 373 aaKnown RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 DEGS2Q6QHC5 323 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 LKAAEAR1Q8TD35 194 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 BOCQ9BWV1 1114 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SDCBPO00560 298 aaPredicted RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 CT45A8P0DMV1 189 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 CT45A9P0DMV2 189 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 CT45A2Q5DJT8 189 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 FBXO46Q6PJ61 603 aaPredicted RBP3.23□□□□□ -1.89
SYNE1-201ENST00000341594 HTR3DQ70Z44 454 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 FAM24BQ8N5W8 94 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 OR6N2Q8NGY6 317 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SUV39H2Q9H5I1 410 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 FBXO7Q9Y3I1 522 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 HSD17B6O14756 317 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 OR2T7P0C7T2 308 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 OSMP13725 252 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 SSR2P43308 183 aa3.23□□□□□ -1.89
SYNE1-201ENST00000341594 OR3A2P47893 321 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms