RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TSPAN32Q96QS1 320 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 PLXNA4Q9HCM2 1894 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 GPR84Q9NQS5 396 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 NTMQ9P121 344 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 KLK13Q9UKR3 277 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 NUP50Q9UKX7 468 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 SLCO1B1Q9Y6L6 691 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 NAP1L6A6NFF2 107 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 TERTO14746 1132 aaKnown RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 SERPINE2P07093 398 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 C21orf33P30042 268 aaPredicted RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 NBL1P41271 181 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 EDDM3AQ14507 147 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 LRRC10Q5BKY1 277 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 FAHD1Q6P587 224 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 DRAM2Q6UX65 266 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 WNT2BQ93097 391 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 ADAT1Q9BUB4 502 aaKnown RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 HINT2Q9BX68 163 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 PRH1P02810 166 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 APEHP13798 732 aaKnown RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 AKR1C4P17516 323 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 CTSSP25774 331 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 RPS25P62851 125 aaKnown RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 IGLV3-21P80748 117 aaPredicted RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 ADGRE4PQ86SQ3 457 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 LSMEM1Q8N8F7 131 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 DTX3Q8N9I9 347 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 FDCSPQ8NFU4 85 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 PRRT1Q99946 306 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 RNF32Q9H0A6 362 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 ZFP57Q9NU63 452 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 A0A1W2PR80 420 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 ZC3H12DA2A288 527 aaKnown RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 SFTPBP07988 381 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 SMN1Q16637 294 aaKnown RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 PLPPR5Q32ZL2 321 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 DGAT2L6Q6ZPD8 337 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 Q6ZTK2 550 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 OR5D18Q8NGL1 313 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 NDNFQ8TB73 568 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 HAS2Q92819 552 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 ITFG2Q969R8 447 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 KCTD12Q96CX2 325 aaKnown RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 SPAG17Q6Q759 2223 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 TMEM129A0AVI4 362 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 OR14I1A6ND48 311 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 FXYD1O00168 92 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 S100A7P31151 101 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 PPP1CBP62140 327 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 NCS1P62166 190 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 HACD4Q5VWC8 232 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 LIPNQ5VXI9 398 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 FAM219BQ5XKK7 198 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 GLIPR1L1Q6UWM5 242 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 OR2Z1Q8NG97 314 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 TOMM40LQ969M1 308 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 SPIN2AQ99865 258 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 SPIN2BQ9BPZ2 258 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 OR51E2Q9H255 320 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 TAAR3PQ9P1P4 343 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 SIGLEC7Q9Y286 467 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 A0A1W2PS29 197 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 ANKRD61A6NGH8 418 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 RAF1P04049 648 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 CAPNS1P04632 268 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 GLAP06280 429 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 BLVRBP30043 206 aaPredicted RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 THBS4P35443 961 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 ZNF92Q03936 586 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 MSRB3Q8IXL7 192 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 OR51F2Q8NH61 342 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 FNDC9Q8TBE3 224 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 ZDHHC16Q969W1 377 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 ETAA1Q9NY74 926 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 LOC100289279A0A1B0GTE1 492 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 SMCO3A2RU48 225 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 OR2AT4A6NND4 320 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 NDUFB3O43676 98 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 H2AFB2P0C5Z0 115 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 PCBP3P57721 371 aaKnown RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 ZFP69Q49AA0 526 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 INO80CQ6PI98 192 aaPredicted RBP9.08□□□□□ -0.96
USP54-201ENST00000339859 GALNT11Q8NCW6 608 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 SCGB1C1Q8TD33 95 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 MBOAT4Q96T53 435 aa9.08□□□□□ -0.96
USP54-201ENST00000339859 PPIHO43447 177 aaKnown RBP9.07□□□□□ -0.96
USP54-201ENST00000339859 RAB3DO95716 219 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 FUT6P51993 359 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 NHLH1Q02575 133 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 PLXDC2Q6UX71 529 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 ADGRG3Q86Y34 549 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 GPR32P1Q8NGA4 272 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 OR4D6Q8NGJ1 314 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 OR13G1Q8NGZ3 307 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 ELMOD3Q96FG2 381 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 OR14A2Q96R54 314 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 NUDT15Q9NV35 164 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 DTX4Q9Y2E6 619 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 NCR1O76036 304 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms