RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TEKQ02763 1124 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 CRMP1Q14194 572 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 ABHD4Q8TB40 342 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 CNBD2Q96M20 576 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 BAIAP2Q9UQB8 552 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 POLR1DQ9Y2S0 133 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 NF1P21359 2839 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 C2CD3Q4AC94 2353 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 NSD1Q96L73 2696 aaPredicted RBP13.53□□□□□ -0.24
CLN3-201ENST00000333496 A0A1W2PPW3 197 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 LOC390937A0A1W2PQ73 354 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 IGHV3-13P01766 116 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 DBHP09172 617 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 DAOP14920 347 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 SLC25A16P16260 332 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 GSTT1P30711 240 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 GGT2P36268 569 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 PPP1CBP62140 327 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 ZNF718Q3SXZ3 478 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 LYPD4Q6UWN0 246 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 LINC00346Q8IVM7 164 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 IQCF1Q8N6M8 205 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 GJC3Q8NFK1 279 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 OR51L1Q8NGJ5 315 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 OR9Q1Q8NGQ5 310 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 OR1F12Q8NHA8 337 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 KLF14Q8TD94 323 aaPredicted RBP13.53□□□□□ -0.24
CLN3-201ENST00000333496 IPCEF1Q8WWN9 437 aaPredicted RBP13.53□□□□□ -0.24
CLN3-201ENST00000333496 CIB1Q99828 191 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 NMNAT2Q9BZQ4 307 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 POFUT1Q9H488 388 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 ELOVL3Q9HB03 270 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 MYOZ1Q9NP98 299 aaPredicted RBP13.53□□□□□ -0.24
CLN3-201ENST00000333496 TBCCD1Q9NVR7 557 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 FN1P02751 2386 aaKnown RBP13.53□□□□□ -0.24
CLN3-201ENST00000333496 SAC3D1A6NKF1 404 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 LYNX1G3V0Z9 82 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 ABHD16AO95870 558 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 HPXP02790 462 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 LYNX1P0DP58 116 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 CLUP10909 449 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 PSKH1P11801 424 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 SELENOVP59797 346 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 LOXL1Q08397 574 aaPredicted RBP13.52□□□□□ -0.25
CLN3-201ENST00000333496 DYNC1I2Q13409 638 aaKnown RBP13.52□□□□□ -0.25
CLN3-201ENST00000333496 APOFQ13790 326 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 CARTPTQ16568 116 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 NKPD1Q17RQ9 610 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 RSPO1Q2MKA7 263 aaPredicted RBP13.52□□□□□ -0.25
CLN3-201ENST00000333496 ELFN2Q5R3F8 820 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 MBNL2Q5VZF2 373 aaKnown RBP13.52□□□□□ -0.25
CLN3-201ENST00000333496 SLC18B1Q6NT16 456 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 ACSM5Q6NUN0 579 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 CFAP77Q6ZQR2 320 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 ZNF786Q8N393 782 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 OR2T4Q8NH00 348 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 TEX47Q8TBZ9 253 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 UBASH3BQ8TF42 649 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 GTF3AQ92664 365 aaKnown RBP13.52□□□□□ -0.25
CLN3-201ENST00000333496 CMC2Q9NRP2 79 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 SLCO1C1Q9NYB5 712 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 UBAP1Q9NZ09 502 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 CYB5R1Q9UHQ9 305 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 ATPIF1Q9UII2 106 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 KLHL21Q9UJP4 597 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 GRIP1Q9Y3R0 1128 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 SVEP1Q4LDE5 3571 aa13.52□□□□□ -0.25
CLN3-201ENST00000333496 C17orf100A8MU93 164 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 H3BN98 237 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 NDUFS8O00217 210 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 NCR1O76036 304 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 HLA-DQA2P01906 255 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 GYPBP06028 91 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 ERCC1P07992 297 aaPredicted RBP13.51□□□□□ -0.25
CLN3-201ENST00000333496 ANXA8P13928 327 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 RPS27P42677 84 aaKnown RBP13.51□□□□□ -0.25
CLN3-201ENST00000333496 NR4A2P43354 598 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 MAGEB1P43366 347 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 RIPPLY3P57055 190 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 C6orf52Q5T4I8 152 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 SHQ1Q6PI26 577 aaKnown RBP13.51□□□□□ -0.25
CLN3-201ENST00000333496 UNQ6126/PRO20091Q6UXV3 157 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 C1orf174Q8IYL3 243 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 GALNT4Q8N4A0 578 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 PROKR2Q8NFJ6 384 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 C9orf16Q9BUW7 83 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 HCAR1Q9BXC0 346 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 PNRC2Q9NPJ4 139 aaKnown RBP13.51□□□□□ -0.25
CLN3-201ENST00000333496 OAZ3Q9UMX2 235 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 STARD10Q9Y365 291 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 TANC2Q9HCD6 1990 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 MALRD1Q5VYJ5 2156 aa13.51□□□□□ -0.25
CLN3-201ENST00000333496 TVP23AA6NH52 213 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 OSMP13725 252 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 HOXB4P17483 251 aaPredicted RBP13.5□□□□□ -0.25
CLN3-201ENST00000333496 GIFP27352 417 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 GCH1P30793 250 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 MMP15P51511 669 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 SLC25A1P53007 311 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 LINC01590Q5TEZ4 76 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms