RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 FN3KQ9H479 309 aa16.51■□□□□ 0.23
LIME1-201ENST00000309546 RPRD1BQ9NQG5 326 aaKnown RBP16.51■□□□□ 0.23
LIME1-201ENST00000309546 TMEM106BQ9NUM4 274 aa16.51■□□□□ 0.23
LIME1-201ENST00000309546 CD300AQ9UGN4 299 aa16.51■□□□□ 0.23
LIME1-201ENST00000309546 ARL2BPQ9Y2Y0 163 aa16.51■□□□□ 0.23
LIME1-201ENST00000309546 NPTNQ9Y639 398 aa16.51■□□□□ 0.23
LIME1-201ENST00000309546 LHFPL6Q9Y693 200 aa16.51■□□□□ 0.23
LIME1-201ENST00000309546 ARHGAP32A7KAX9 2087 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 IGLV1-36A0A0B4J1U3 117 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 HAX1O00165 279 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 AVPP01185 164 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 SBK2P0C263 348 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 HIST1H1CP16403 213 aaKnown RBP16.5■□□□□ 0.23
LIME1-201ENST00000309546 TNFRSF1AP19438 455 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 IFNGR2P38484 337 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 RGS6P49758 472 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 LCN2P80188 198 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 HLXQ14774 488 aaPredicted RBP16.5■□□□□ 0.23
LIME1-201ENST00000309546 LINC00346Q8IVM7 164 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 ZDHHC21Q8IVQ6 265 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 OR6V1Q8N148 313 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 GJC3Q8NFK1 279 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 ITLN1Q8WWA0 313 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 HAVCR1Q96D42 359 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 TMPRSS13Q9BYE2 586 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 HDHD2Q9H0R4 259 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 NDE1Q9NXR1 346 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 ATPIF1Q9UII2 106 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 PCDHB10Q9UN67 800 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 B9D1Q9UPM9 204 aa16.5■□□□□ 0.23
LIME1-201ENST00000309546 DCTN3O75935 186 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 VENTXO95231 258 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 ADRA2CP18825 462 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 EPHA1P21709 976 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 C1orf229Q6ZS94 237 aaPredicted RBP16.49■□□□□ 0.23
LIME1-201ENST00000309546 TEX29Q8N6K0 151 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 ATG16L2Q8NAA4 619 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 SDR9C7Q8NEX9 313 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 OR5L1Q8NGL2 311 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 GNPDA2Q8TDQ7 276 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 PTP4A1Q93096 173 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 APOBEC3DQ96AK3 386 aaPredicted RBP16.49■□□□□ 0.23
LIME1-201ENST00000309546 COQ7Q99807 217 aa16.49■□□□□ 0.23
LIME1-201ENST00000309546 J3QW42 95 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 ARPC3O15145 178 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 SURF4O15260 269 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 IGHV2-70P01814 119 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 HLA-DQA2P01906 255 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 RAC2P15153 192 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 SLC35F1Q5T1Q4 408 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 OR2T2Q6IF00 324 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 PGBD2Q6P3X8 592 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 CYP2R1Q6VVX0 501 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 ZNF620Q6ZNG0 422 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.48■□□□□ 0.23
LIME1-201ENST00000309546 SLC26A10Q8NG04 563 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 OR10AD1Q8NGE0 317 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 OR52E2Q8NGJ4 325 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 ZNF418Q8TF45 676 aaPredicted RBP16.48■□□□□ 0.23
LIME1-201ENST00000309546 OR2V2Q96R30 315 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 CDADC1Q9BWV3 514 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 WDR76Q9H967 626 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 IL1RAPQ9NPH3 570 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 IL19Q9UHD0 177 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 PPP1R3CQ9UQK1 317 aa16.48■□□□□ 0.23
LIME1-201ENST00000309546 GSSP48637 474 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 HIST1H3AP68431 136 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.47■□□□□ 0.23
LIME1-201ENST00000309546 COX10Q12887 443 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 SLC36A3Q495N2 470 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 CLEC12AQ5QGZ9 265 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 HIST2H3PS2Q5TEC6 136 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 CFAP77Q6ZQR2 320 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 HIST2H3AQ71DI3 136 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 C1QL2Q7Z5L3 287 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 PIGWQ7Z7B1 504 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 KLHL36Q8N4N3 616 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 SPICQ8N5J4 248 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 ZNF283Q8N7M2 679 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 BHLHE23Q8NDY6 225 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 OR9Q2Q8NGE9 314 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 OR52L1Q8NGH7 329 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 OR2AJ1Q8NGZ0 328 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 EGLN3Q9H6Z9 239 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 C7orf69Q9H7B7 122 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 ANK2Q01484 3957 aa16.47■□□□□ 0.23
LIME1-201ENST00000309546 OR6C68A6NDL8 312 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 J3QLI3 93 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 FOXH1O75593 365 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 ATP6V1B2P21281 511 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 BTG1P62324 171 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 TSPAN31Q12999 210 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 SLC18B1Q6NT16 456 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 FBXW12Q6X9E4 464 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 SEMA6DQ8NFY4 1073 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 PITX2Q99697 317 aa16.46■□□□□ 0.23
LIME1-201ENST00000309546 A0A0A6YYJ9 748 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 F5H5K5 113 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 TNFRSF11BO00300 401 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 GATA3P23771 443 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms