RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 APOBEC3DQ96AK3 386 aaPredicted RBP12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 TRAV27A0A087WT01 109 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 TEX13CA0A0J9YWL9 993 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 CLPSL1A2RUU4 121 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 EFCAB9A8MZ26 197 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 CYB5R3P00387 301 aaPredicted RBP12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 SCG5P05408 212 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 CD14P08571 375 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 IRF2P14316 349 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 SELEP16581 610 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 RPL4P36578 427 aaKnown RBP12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 NPY4RP50391 375 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 KCNJ8Q15842 424 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 METTL21CQ5VZV1 264 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 FIP1L1Q6UN15 594 aaKnown RBP12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 Q6YL49 198 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 DCDC5Q6ZRR9 648 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 JAZF1Q86VZ6 243 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 OR5AS1Q8N127 324 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 FITM2Q8N6M3 262 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 CELF2-AS1Q8N7Q2 184 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 OR10AD1Q8NGE0 317 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 ZNF420Q8TAQ5 688 aaPredicted RBP12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 SSMEM1Q8WWF3 244 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 LZICQ8WZA0 190 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 SIKE1Q9BRV8 207 aa12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 PDP1Q9P0J1 537 aaPredicted RBP12.33□□□□□ -0.44
CCDC88B-201ENST00000301897 MDFIC2A0A1B0GVS7 189 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 PRSS37A4D1T9 235 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 P2RY10O00398 339 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 FBP2O00757 339 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 LIPFP07098 398 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 RBMXP38159 391 aaKnown RBP12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 GATA4P43694 442 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 FGF12P61328 243 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 PRKCDQ05655 676 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 TRAM2Q15035 370 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 CYBRD1Q53TN4 286 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 RABL3Q5HYI8 236 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 COQ5Q5HYK3 327 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 CD276Q5ZPR3 534 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 WDR25Q64LD2 544 aaPredicted RBP12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 OR2T2Q6IF00 324 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 PGM2L1Q6PCE3 622 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 BRD3OSQ6XYD6 125 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 ZNF620Q6ZNG0 422 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 MOGAT3Q86VF5 341 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 GLB1L2Q8IW92 636 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 NRMQ8IXM6 262 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 OFCC1Q8IZS5 231 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 OR11L1Q8NGX0 322 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 TAF15Q92804 592 aaKnown RBP eCLIP12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 UBE2FQ969M7 185 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 FNDC11Q9BVV2 318 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 HCAR1Q9BXC0 346 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 C1RLQ9NZP8 487 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 ASH2LQ9UBL3 628 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 A4GNTQ9UNA3 340 aa12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 SOX21Q9Y651 276 aaPredicted RBP12.32□□□□□ -0.44
CCDC88B-201ENST00000301897 A0A1B0GWJ7 208 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 IQCF6A8MYZ5 107 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 H7C1C5 153 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 KHDRBS3O75525 346 aaKnown RBP12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 ZNF205O95201 554 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 KDELR2P33947 212 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 ERFP50548 548 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 LCN6P62502 163 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 FHL1Q13642 323 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 HLXQ14774 488 aaPredicted RBP12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 LRRC23Q53EV4 343 aaPredicted RBP12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 GPR139Q6DWJ6 353 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 MICU2Q8IYU8 434 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 TBC1D15Q8TC07 691 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 Q8TCH9 128 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 C10orf82Q8WW14 230 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 ACOT11Q8WXI4 607 aaPredicted RBP12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 DYRK2Q92630 601 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 TPD52L3Q96J77 140 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 ATP6V1G3Q96LB4 118 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 ZNF570Q96NI8 536 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 CHIAQ9BZP6 476 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 HDHD2Q9H0R4 259 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 MARCH7Q9H992 704 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 TMEM100Q9NV29 134 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 PTTG3PQ9NZH4 202 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 ARMCX1Q9P291 453 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 POLR1DQ9Y2S0 133 aa12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 NOP16Q9Y3C1 178 aaKnown RBP12.31□□□□□ -0.44
CCDC88B-201ENST00000301897 BBIP1A8MTZ0 92 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 TNFRSF13BO14836 293 aaPredicted RBP12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 IFNW1P05000 195 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 MELTFP08582 738 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 CTLA4P16410 223 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 FPR3P25089 353 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 SELENOWP63302 87 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 ZBED5Q49AG3 693 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 CCDC92Q53HC0 331 aaPredicted RBP12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 MESTQ5EB52 335 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 ZNF730Q6ZMV8 503 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 RRM2BQ7LG56 351 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms