RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 INSIG2Q9Y5U4 225 aa10.74□□□□□ -0.69
CD44-203ENST00000278386 IER3IP1Q9Y5U9 82 aa10.74□□□□□ -0.69
CD44-203ENST00000278386 CEACAM18A8MTB9 384 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 F5H0A9 414 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 TRAPPC2LH3BP13 241 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 J3QW42 95 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 ZNF205O95201 554 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 GPANK1O95872 356 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 CYB5R3P00387 301 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 RAC2P15153 192 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 RPS2P15880 293 aaKnown RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 SLC6A9P48067 706 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 RPS6KA3P51812 740 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 HLXQ14774 488 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 MEP1BQ16820 701 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 PTCHD4Q6ZW05 846 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 JAZF1Q86VZ6 243 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 LRRC28Q86X40 367 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 BHLHE23Q8NDY6 225 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 ZNF420Q8TAQ5 688 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 FANK1Q8TC84 345 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 MEGF10Q96KG7 1140 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 GPX7Q96SL4 187 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 GPA33Q99795 319 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 SSBP3Q9BWW4 388 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 MS4A7Q9GZW8 240 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 NUAK2Q9H093 628 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 HDHD2Q9H0R4 259 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 NRIP3Q9NQ35 241 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 VSX1Q9NZR4 365 aaPredicted RBP10.73□□□□□ -0.69
CD44-203ENST00000278386 ZNF69Q9UC07 566 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 ATPIF1Q9UII2 106 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 LRCH1Q9Y2L9 728 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 PCDHGB1Q9Y5G3 927 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 V9GYQ6 96 aa10.73□□□□□ -0.69
CD44-203ENST00000278386 TRBV4-1A0A0J9YWV2 114 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 IGHV3-64DA0A0J9YX35 117 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 A0A1W2PRQ8 180 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 UNC119BA6NIH7 251 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 TMEM178BH3BS89 294 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 IFNL4K9M1U5 179 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 NDUFAB1O14561 156 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 CCDC22O60826 627 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 DIRAS1O95057 198 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 PPP1R3DO95685 299 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 EGR1P18146 543 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 RHCEP18577 417 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 SRP9P49458 86 aaKnown RBP10.72□□□□□ -0.69
CD44-203ENST00000278386 GNB2P62879 340 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 FOXL1Q12952 345 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 BAMBIQ13145 260 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 DGCR6Q14129 220 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 KRT72Q14CN4 511 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 SLC27A4Q6P1M0 643 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 PGM2L1Q6PCE3 622 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 BTNL3Q6UXE8 466 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 FBXW12Q6X9E4 464 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 DOK3Q7L591 496 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 OR8G5Q8NG78 346 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 OR13G1Q8NGZ3 307 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 OR52J3Q8NH60 311 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 APOBEC3DQ96AK3 386 aaPredicted RBP10.72□□□□□ -0.69
CD44-203ENST00000278386 ZNF582Q96NG8 517 aaPredicted RBP10.72□□□□□ -0.69
CD44-203ENST00000278386 TSSK2Q96PF2 358 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 COQ7Q99807 217 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 C1QTNF5Q9BXJ0 243 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 WDR76Q9H967 626 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 ZMAT3Q9HA38 289 aaKnown RBP10.72□□□□□ -0.69
CD44-203ENST00000278386 EFCAB1Q9HAE3 211 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 GCM1Q9NP62 436 aa10.72□□□□□ -0.69
CD44-203ENST00000278386 POLR3KQ9Y2Y1 108 aaPredicted RBP10.72□□□□□ -0.69
CD44-203ENST00000278386 IGHV3OR16-10A0A075B7F0 116 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 TRAV40A0A0B4J280 105 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 LRRC30A6NM36 301 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 H0YL77 283 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 PTP4A3O75365 173 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 GMNNO75496 209 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 RENP00797 406 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 HKR1P10072 659 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 PRTN3P24158 256 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 CRABP1P29762 137 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 CDKN2AP42771 156 aaKnown RBP10.71□□□□□ -0.69
CD44-203ENST00000278386 OMPP47874 163 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 FXYD6P3P58550 94 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 SPIBQ01892 262 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 KLF17Q5JT82 389 aaPredicted RBP10.71□□□□□ -0.69
CD44-203ENST00000278386 C8orf82Q6P1X6 216 aaPredicted RBP10.71□□□□□ -0.69
CD44-203ENST00000278386 LEG1Q6P5S2 330 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 CORO6Q6QEF8 472 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 SMARCD3Q6STE5 483 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 HACD2Q6Y1H2 254 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 DPY19L2P2Q6ZN68 376 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 TSEN54Q7Z6J9 526 aaKnown RBP10.71□□□□□ -0.69
CD44-203ENST00000278386 MOGAT3Q86VF5 341 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 C1orf87Q8N0U7 546 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 BCL6BQ8N143 479 aaPredicted RBP10.71□□□□□ -0.69
CD44-203ENST00000278386 PARP8Q8N3A8 854 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 GJC3Q8NFK1 279 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 OR52E2Q8NGJ4 325 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 ERMAPQ96PL5 475 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms