RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PRDM12Q9H4Q4 367 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 BABAM2Q9NXR7 383 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 MTCH1Q9NZJ7 389 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 LTBP4Q8N2S1 1624 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TRBV2A0A0J9YWF9 115 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 A0A1W2PQL4 384 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 CD300LBA8K4G0 201 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ANKRD66B4E2M5 251 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 H3BML4 177 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF195O14628 629 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ENPP3O14638 875 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CST2P09228 141 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 POLR2CP19387 275 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 CSNK1A1P48729 337 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CDKN1CP49918 316 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 TAS2R38P59533 333 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 HERVK_113P61574 105 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 DOC2AQ14183 400 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF74Q16587 644 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CD300LGQ6UXG3 332 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TMEM135Q86UB9 458 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 GABRG1Q8N1C3 465 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ARL14EPQ8N8R7 260 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 NETO2Q8NC67 525 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SCAMP5Q8TAC9 235 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 FAM213BQ8TBF2 198 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZFAND1Q8TCF1 268 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 REEP6Q96HR9 211 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 INTS14Q96SY0 518 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PCYT2Q99447 389 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 MCRIP2Q9BUT9 160 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 PLEKHF2Q9H8W4 249 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C9orf172C9J069 976 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 FCN1O00602 326 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PIAS1O75925 651 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C4BPAP04003 597 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 SNTB2Q13425 540 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 SELPLGQ14242 412 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SFT2D3Q587I9 215 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ASPGQ86U10 573 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SPICQ8N5J4 248 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR4X2Q8NGF9 303 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CNIH3Q8TBE1 160 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SLC7A13Q8TCU3 470 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PYURFQ96I23 114 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TEPSINQ96N21 525 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR2V2Q96R30 315 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PIGMQ9H3S5 423 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 EPHB6O15197 1021 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 LYRM1O43325 122 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZP3P21754 424 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 EPHA8P29322 1005 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 ARL13AQ5H913 290 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 Q5PR19 223 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C1orf185Q5T7R7 199 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR2T2Q6IF00 324 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PDZD3Q86UT5 571 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 RAB3CQ96E17 227 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CABLES2Q9BTV7 478 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 GPR87Q9BY21 358 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 COMMD5Q9GZQ3 224 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PBOV1Q9GZY1 135 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 LIN7BQ9HAP6 207 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 P4HTMQ9NXG6 502 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR6C3Q9NZP0 311 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SLAMF8Q9P0V8 285 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 RPH3ALQ9UNE2 315 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TRGV10A0A0A0MS01 117 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 HCRTR1O43613 425 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PRKRAO75569 313 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 FAM155BO75949 473 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 F11P03951 625 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 F7P08709 466 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 HOXA11P31270 313 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 PCP4P48539 62 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PSMB2P49721 201 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF90Q03938 601 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SPEM2Q0P670 501 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TRIP6Q15654 476 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 ACTBL2Q562R1 376 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 FAM205BPQ63HN1 556 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CLEC6AQ6EIG7 209 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TRAT1Q6PIZ9 186 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TSEN54Q7Z6J9 526 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 C2orf73Q8N5S3 287 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 C11orf42Q8N5U0 333 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 EID2Q8N6I1 236 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C3orf56Q8N813 242 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 KIAA1958Q8N8K9 716 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SYT14Q8NB59 555 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ARHGDIGQ99819 225 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZFYVE21Q9BQ24 234 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 WDR61Q9GZS3 305 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 ACOT13Q9NPJ3 140 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 DUSP13Q9UII6 198 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF256Q9Y2P7 627 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 COQ4Q9Y3A0 265 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ASB1Q9Y576 335 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 KPTNQ9Y664 436 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 A0A1B0GUL6 1792 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms