RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CD47Q08722 323 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 MOGQ16653 247 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 DEFB112Q30KQ8 113 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 THEM4Q5T1C6 240 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 SLC25A47Q6Q0C1 308 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 FKBP9P1Q75LS8 142 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 OAFQ86UD1 273 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 NRMQ8IXM6 262 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 LRRC18Q8N456 261 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 LINC01006Q8NI28 216 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 MRAPQ8TCY5 172 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 ZDHHC16Q969W1 377 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 UPRTQ96BW1 309 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 RBP7Q96R05 134 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 SLC30A2Q9BRI3 323 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 BCL2L14Q9BZR8 327 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 ANKRD19PQ9H560 264 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 PATZ1Q9HBE1 687 aaKnown RBP13.7□□□□□ -0.22
CLN3-264ENST00000637985 CCNB1IP1Q9NPC3 277 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 TNFRSF19Q9NS68 423 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 RHCGQ9UBD6 479 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 ABCD2Q9UBJ2 740 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 KLHL21Q9UJP4 597 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 UGT2A1Q9Y4X1 527 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 NPTNQ9Y639 398 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 DNAH3Q8TD57 4116 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 A6NIZ1 184 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 EFCAB9A8MZ26 197 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 IGHV1-46P01743 117 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 IGHV3-13P01766 116 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 IGHV2-70P01814 119 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 APLNRP35414 380 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 UCP2P55851 309 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 RAP1BP61224 184 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 RAP1AP62834 184 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 HSF2Q03933 536 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 C2orf68Q2NKX9 166 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 Q6YL49 198 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 ZNF730Q6ZMV8 503 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 MBOAT2Q6ZWT7 520 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 CYP4Z1Q86W10 505 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 LRRC75AQ8NAA5 344 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 FAM156AQ8NDB6 213 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 FAM162AQ96A26 154 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 NABP1Q96AH0 204 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 HSH2DQ96JZ2 352 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 DIRC2Q96SL1 478 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 KCTD14Q9BQ13 255 aaPredicted RBP13.69□□□□□ -0.22
CLN3-264ENST00000637985 ELAC2Q9BQ52 826 aaKnown RBP13.69□□□□□ -0.22
CLN3-264ENST00000637985 MYLK2Q9H1R3 596 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 OR51B6Q9H340 312 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 MARCH7Q9H992 704 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 EGFL7Q9UHF1 273 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 RPS6KA6Q9UK32 745 aa13.69□□□□□ -0.22
CLN3-264ENST00000637985 TRAV27A0A087WT01 109 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 A0A087WUU8 490 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 IGKV1D-43A0A0B4J1Z2 117 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 LCKP06239 509 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 SBK2P0C263 348 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 CCL2P13500 99 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 FUT4P22083 530 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 PRDX6P30041 224 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 CDAP32320 146 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 GUCA1AP43080 201 aaPredicted RBP13.68□□□□□ -0.22
CLN3-264ENST00000637985 ZNF81P51508 661 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 PSME3P61289 254 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 RPL15P61313 204 aaKnown RBP13.68□□□□□ -0.22
CLN3-264ENST00000637985 GLO1Q04760 184 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 FMODQ06828 376 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 TOP3AQ13472 1001 aaPredicted RBP13.68□□□□□ -0.22
CLN3-264ENST00000637985 FHL1Q13642 323 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 SGCAQ16586 387 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 PABPC1L2AQ5JQF8 200 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 FAM27BQ5VT28 67 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 TMPRSS11FQ6ZWK6 438 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 RRM2BQ7LG56 351 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 KLHL36Q8N4N3 616 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 SPICQ8N5J4 248 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 TMEM86BQ8N661 226 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 OR51A7Q8NH64 312 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 NSMAFQ92636 917 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 NOX4Q9NPH5 578 aa13.68□□□□□ -0.22
CLN3-264ENST00000637985 TRAV40A0A0B4J280 105 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 SPRY3O43610 288 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 ZNF32P17041 273 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 STOMP27105 288 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 PAX2Q02962 417 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 TMEM155Q4W5P6 130 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 UNQ6126/PRO20091Q6UXV3 157 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 ZNF620Q6ZNG0 422 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 FOXL2NBQ6ZUU3 175 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 IGFN1Q86VF2 1251 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 CPEB3Q8NE35 698 aaKnown RBP13.67□□□□□ -0.22
CLN3-264ENST00000637985 OR10S1Q8NGN2 331 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 NDEL1Q9GZM8 345 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 NMNAT1Q9HAN9 279 aaPredicted RBP13.67□□□□□ -0.22
CLN3-264ENST00000637985 SPAG4Q9NPE6 437 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 DCAF16Q9NXF7 216 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 OR5V1Q9UGF6 321 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 IL20RAQ9UHF4 553 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms