RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FN1P02751 2386 aaKnown RBP11.59□□□□□ -0.55
LINC00540-202ENST00000616974 PRR32B1ATL7 298 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 DLGAP1O14490 977 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 SMPD2O60906 423 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 ZNF3P17036 446 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 MPV17P39210 176 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 PTH2RP49190 550 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 AQP6Q13520 282 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 RCN1Q15293 331 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 SNAPC1Q16533 368 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 C3orf36Q3SXR2 165 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 DPY19L4Q7Z388 723 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 TCEANCQ8N8B7 351 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 MBOAT4Q96T53 435 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 KLHL21Q9UJP4 597 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.59□□□□□ -0.55
LINC00540-202ENST00000616974 NAV3Q8IVL0 2385 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 IQCMA0A1B0GVH7 501 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 OR6C6A6NF89 314 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 TLX2O43763 284 aaPredicted RBP11.59□□□□□ -0.55
LINC00540-202ENST00000616974 APOL3O95236 402 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 MRPL3P09001 348 aaKnown RBP11.59□□□□□ -0.55
LINC00540-202ENST00000616974 PEX2P28328 305 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 APOBEC3AP31941 199 aaPredicted RBP11.59□□□□□ -0.55
LINC00540-202ENST00000616974 SERPINF1P36955 418 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 NAA10P41227 235 aaPredicted RBP11.59□□□□□ -0.55
LINC00540-202ENST00000616974 GUCA1AP43080 201 aaPredicted RBP11.59□□□□□ -0.55
LINC00540-202ENST00000616974 ALDH3B1P43353 468 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 HIST1H3AP68431 136 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 EFNB1P98172 346 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 HIST2H3PS2Q5TEC6 136 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 HIST2H3AQ71DI3 136 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 CIARTQ8N365 385 aaPredicted RBP11.59□□□□□ -0.55
LINC00540-202ENST00000616974 NUP37Q8NFH4 326 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 OR2T4Q8NH00 348 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 GRIP1Q9Y3R0 1128 aa11.59□□□□□ -0.55
LINC00540-202ENST00000616974 CCDC182A6NF36 153 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 C12orf71A8MTZ7 269 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 LCKP06239 509 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 SPARCP09486 303 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 APLNRP35414 380 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 UCP2P55851 309 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 LSM6P62312 80 aaKnown RBP11.58□□□□□ -0.56
LINC00540-202ENST00000616974 TBC1D28Q2M2D7 210 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 SLX4IPQ5VYV7 408 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 C12orf73Q69YU5 71 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 CXXC5Q7LFL8 322 aaKnown RBP11.58□□□□□ -0.56
LINC00540-202ENST00000616974 SSX8Q7RTT4 187 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 DCXRQ7Z4W1 244 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 ERI1Q8IV48 349 aaKnown RBP11.58□□□□□ -0.56
LINC00540-202ENST00000616974 DEPDC4Q8N2C3 294 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 NINJ1Q92982 152 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 SORCS2Q96PQ0 1159 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 GABARAPL3Q9BY60 117 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 OR2J1Q9GZK6 312 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 KCNN2Q9H2S1 579 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 CDH20Q9HBT6 801 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 CBLN4Q9NTU7 201 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 DUSP13Q9UII6 198 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 BAIAP2Q9UQB8 552 aa11.58□□□□□ -0.56
LINC00540-202ENST00000616974 TRIM64A6NGJ6 449 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 TRIM64BA6NI03 449 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 PRR23D1E9PI22 279 aaPredicted RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 ZNF593O00488 134 aaPredicted RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 MAGEB4O15481 346 aaPredicted RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 PRR23D2P0DMB1 279 aaPredicted RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 SLC2A1P11166 492 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 ANPEPP15144 967 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 SLC25A1P53007 311 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 ELF3P78545 371 aaPredicted RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 GALK2Q01415 458 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 PLP2Q04941 152 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 APOFQ13790 326 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 Q5PR19 223 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 DNM1P34Q6PK57 102 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 TIGD4Q8IY51 512 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 FBXL14Q8N1E6 418 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 ABHD4Q8TB40 342 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 ST7LQ8TDW4 575 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 MBD6Q96DN6 1003 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 CXXC4Q9H2H0 198 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 TPK1Q9H3S4 243 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 TOR3AQ9H497 397 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 PSMD9O00233 223 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 CLIC3O95833 236 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 IFNGP01579 166 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 ATP5J2P56134 94 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 ESRRGP62508 458 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 HLXQ14774 488 aaPredicted RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 SPRNQ5BIV9 151 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 GALNT4Q8N4A0 578 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 MAPK1IP1LQ8NDC0 245 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 OR1J1Q8NGS3 322 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 OR6N2Q8NGY6 317 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 OR1F12Q8NHA8 337 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 SLC25A40Q8TBP6 338 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 IPCEF1Q8WWN9 437 aaPredicted RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 RBM4BQ9BQ04 359 aaKnown RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 ZNF701Q9NV72 531 aaPredicted RBP11.57□□□□□ -0.56
LINC00540-202ENST00000616974 STARD10Q9Y365 291 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms