RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 ZNF774Q6NX45 483 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 ZNF322Q6U7Q0 402 aaPredicted RBP12.8□□□□□ -0.36
CD48-203ENST00000613788 C22orf34Q6ZV56 151 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 VASH1Q7L8A9 365 aaPredicted RBP12.8□□□□□ -0.36
CD48-203ENST00000613788 WFDC8Q8IUA0 241 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.8□□□□□ -0.36
CD48-203ENST00000613788 OR1F12Q8NHA8 337 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 RNF133Q8WVZ7 376 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 ATF6BQ99941 703 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 RHNO1Q9BSD3 238 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 JAM3Q9BX67 310 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 NOX3Q9HBY0 568 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 SLC24A3Q9HC58 644 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 CENPMQ9NSP4 180 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 ATPIF1Q9UII2 106 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 COPS3Q9UNS2 423 aa12.8□□□□□ -0.36
CD48-203ENST00000613788 EXOSC1Q9Y3B2 195 aaKnown RBP12.8□□□□□ -0.36
CD48-203ENST00000613788 ZNF878C9JN71 531 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 SYNGR3O43761 229 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 CDK1P06493 297 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 THBDP07204 575 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 ZNF14P17017 642 aaPredicted RBP12.79□□□□□ -0.36
CD48-203ENST00000613788 APLNRP35414 380 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 IDH3GP51553 393 aaPredicted RBP12.79□□□□□ -0.36
CD48-203ENST00000613788 CHN2P52757 468 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 SNTB1Q13884 538 aaKnown RBP12.79□□□□□ -0.36
CD48-203ENST00000613788 TAF13Q15543 124 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 DEGS2Q6QHC5 323 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 PLEKHG7Q6ZR37 379 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 KCTD20Q7Z5Y7 419 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 KRT77Q7Z794 578 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 LHFPL3Q86UP9 236 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 DMRTC2Q8IXT2 367 aaPredicted RBP12.79□□□□□ -0.36
CD48-203ENST00000613788 IL17RDQ8NFM7 739 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 OR1J2Q8NGS2 313 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 SNX33Q8WV41 574 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 ZNF75AQ96N20 296 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 COQ7Q99807 217 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 MROQ9BYG7 248 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 KLHDC2Q9Y2U9 406 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 MYO18BQ8IUG5 2567 aa12.79□□□□□ -0.36
CD48-203ENST00000613788 OR6C6A6NF89 314 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 PRSS44E7EML9 344 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 RGS10O43665 173 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 ZNF254O75437 659 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 IGLV1-44P01699 117 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 H2BFMP0C1H6 154 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 IGFBP2P18065 325 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 STOMP27105 288 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 APEX1P27695 318 aaKnown RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 HTR5AP47898 357 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 GDI2P50395 445 aaKnown RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 ZNF83P51522 516 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 GABARAPL2P60520 117 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 ACTA2P62736 377 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 GRB2P62993 217 aaKnown RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 ACTG2P63267 376 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 ROM1Q03395 351 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 GALEQ14376 348 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 TMEM108Q6UXF1 575 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 EGFL6Q8IUX8 553 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 ZNF679Q8IYX0 411 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 CPEB3Q8NE35 698 aaKnown RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 OR10S1Q8NGN2 331 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 SPTSSAQ969W0 71 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 AMELYQ99218 206 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 PNRC2Q9NPJ4 139 aaKnown RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 DDX28Q9NUL7 540 aaKnown RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 ERVK13-1Q9NX77 482 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 IKZF2Q9UKS7 526 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 C19orf84I3L1E1 186 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 M0R1B8 84 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 MRPS14O60783 128 aaKnown RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 SULT1C4O75897 302 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 TNFAIP8O95379 198 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 APOC1P02654 83 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 KRT8P05787 483 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 TACSTD2P09758 323 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 EPXP11678 715 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 C21orf33P30042 268 aaPredicted RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 ZNF85Q03923 595 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 TBC1D28Q2M2D7 210 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 RNLSQ5VYX0 342 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 LRRN1Q6UXK5 716 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 SPATC1Q76KD6 591 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 ZNF584Q8IVC4 421 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 SLC30A7Q8NEW0 376 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 FAM222BQ8WU58 562 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 MS4A3Q96HJ5 214 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 OR8B4Q96RC9 309 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 NR1H4Q96RI1 486 aaPredicted RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 KCNJ15Q99712 375 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 ALG8Q9BVK2 526 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 CCDC90BQ9GZT6 254 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 NIPAL2Q9H841 368 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 PAK1IP1Q9NWT1 392 aaPredicted RBP12.78□□□□□ -0.36
CD48-203ENST00000613788 SLCO1C1Q9NYB5 712 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 NPAP1Q9NZP6 1156 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 ERVK-18Q9QC07 812 aa12.78□□□□□ -0.36
CD48-203ENST00000613788 IGHV1-18A0A0C4DH31 117 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms