RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 SLCO4A1Q96BD0 722 aa16.64■□□□□ 0.25
UPF1-212ENST00000601689 RAB3IPQ96QF0 476 aaPredicted RBP16.64■□□□□ 0.25
UPF1-212ENST00000601689 PITX2Q99697 317 aa16.64■□□□□ 0.25
UPF1-212ENST00000601689 PIMREGQ9BSJ6 248 aa16.64■□□□□ 0.25
UPF1-212ENST00000601689 REG4Q9BYZ8 158 aa16.64■□□□□ 0.25
UPF1-212ENST00000601689 FN3KQ9H479 309 aa16.64■□□□□ 0.25
UPF1-212ENST00000601689 DLL4Q9NR61 685 aa16.64■□□□□ 0.25
UPF1-212ENST00000601689 CMC2Q9NRP2 79 aa16.64■□□□□ 0.25
UPF1-212ENST00000601689 GRIP1Q9Y3R0 1128 aa16.64■□□□□ 0.25
UPF1-212ENST00000601689 RNF223E7ERA6 249 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 J3QW42 95 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 TP53P04637 393 aaPredicted RBP16.63■□□□□ 0.25
UPF1-212ENST00000601689 GAAP10253 952 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 ZNF23P17027 643 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 SLC25A1P53007 311 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 PPP1CBP62140 327 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 ATP6AP1Q15904 470 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 ZMAT1Q5H9K5 638 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 CLEC9AQ6UXN8 241 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 ASRGL1Q7L266 308 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 TMEM179BQ7Z7N9 219 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 ZNF525Q8N782 197 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 OR4Q3Q8NH05 313 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 DUS3LQ96G46 650 aaKnown RBP16.63■□□□□ 0.25
UPF1-212ENST00000601689 COQ7Q99807 217 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 PAPOLBQ9NRJ5 636 aaKnown RBP16.63■□□□□ 0.25
UPF1-212ENST00000601689 CYSLTR2Q9NS75 346 aa16.63■□□□□ 0.25
UPF1-212ENST00000601689 CGGBP1Q9UFW8 167 aaPredicted RBP16.63■□□□□ 0.25
UPF1-212ENST00000601689 RER1O15258 196 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 PRKACGP22612 351 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 CRMP1Q14194 572 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 GINS1Q14691 196 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 MEP1BQ16820 701 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 PCGF3Q3KNV8 242 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 OR6K6Q8NGW6 343 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 SLC25A40Q8TBP6 338 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 UBASH3BQ8TF42 649 aa16.62■□□□□ 0.25
UPF1-212ENST00000601689 HINT3Q9NQE9 182 aaKnown RBP16.62■□□□□ 0.25
UPF1-212ENST00000601689 IGLV3-9A0A075B6K5 115 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 PRR23D1E9PI22 279 aaPredicted RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 TPD52L2O43399 206 aaKnown RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 ICMTO60725 284 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 GPANK1O95872 356 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 IGHV3-13P01766 116 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 IGFBP1P08833 259 aaPredicted RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 PRR23D2P0DMB1 279 aaPredicted RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 DAOP14920 347 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 PYCR1P32322 319 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 ALDH3B1P43353 468 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 CCDC92Q53HC0 331 aaPredicted RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 MBNL2Q5VZF2 373 aaKnown RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 ZFP1Q6P2D0 407 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 LRP11Q86VZ4 500 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 HS3ST5Q8IZT8 346 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 OR9Q1Q8NGQ5 310 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 SPTSSAQ969W0 71 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 UTP4Q969X6 686 aaKnown RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 ATF6BQ99941 703 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 RBM4Q9BWF3 364 aaKnown RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 OR2J1Q9GZK6 312 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 TPK1Q9H3S4 243 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 KRT84Q9NSB2 600 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 DECR2Q9NUI1 292 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 LHFPL6Q9Y693 200 aa16.61■□□□□ 0.25
UPF1-212ENST00000601689 ZNF469Q96JG9 3925 aaPredicted RBP16.61■□□□□ 0.25
UPF1-212ENST00000601689 TFP02787 698 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 WNT5AP41221 380 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 ENTPD1P49961 510 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 ERVS71-1P61550 626 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 ESRRGP62508 458 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 CCNIQ14094 377 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 TAF13Q15543 124 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 SPATA46Q5T0L3 261 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 CORO6Q6QEF8 472 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 DNM1P46Q6ZS02 220 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 LINC00346Q8IVM7 164 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 ZNF101Q8IZC7 436 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 KLF14Q8TD94 323 aaPredicted RBP16.6■□□□□ 0.25
UPF1-212ENST00000601689 C10orf105Q8TEF2 133 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 APOBEC3DQ96AK3 386 aaPredicted RBP16.6■□□□□ 0.25
UPF1-212ENST00000601689 MARS2Q96GW9 593 aaKnown RBP16.6■□□□□ 0.25
UPF1-212ENST00000601689 DDOQ99489 341 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 CYB5R1Q9UHQ9 305 aa16.6■□□□□ 0.25
UPF1-212ENST00000601689 CHD3Q12873 2000 aaKnown RBP16.6■□□□□ 0.25
UPF1-212ENST00000601689 FLNAP21333 2647 aaKnown RBP16.6■□□□□ 0.25
UPF1-212ENST00000601689 IGHV4-30-2A0A087WSY4 118 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 C17orf100A8MU93 164 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 TIMM8AO60220 97 aaPredicted RBP16.59■□□□□ 0.25
UPF1-212ENST00000601689 CLPTM1O96005 669 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 NAT2P11245 290 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 SPI1P17947 270 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 TPTEP56180 551 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 HIST1H3AP68431 136 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 ALKBH6Q3KRA9 238 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 FAM209AQ5JX71 171 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 ZNF362Q5T0B9 420 aaPredicted RBP16.59■□□□□ 0.25
UPF1-212ENST00000601689 HIST2H3PS2Q5TEC6 136 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 OTPQ5XKR4 325 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 SLC18B1Q6NT16 456 aa16.59■□□□□ 0.25
UPF1-212ENST00000601689 HIST2H3AQ71DI3 136 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms