RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 SYNPRQ8TBG9 265 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 COX4I2Q96KJ9 171 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 C4orf45Q96LM5 186 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 HDHD2Q9H0R4 259 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 GABARAPL1Q9H0R8 117 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 CYB5R1Q9UHQ9 305 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 DUSP13Q9UII6 198 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 KCNG2Q9UJ96 466 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 COMMD3-BMI1R4GMX3 469 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 ITPR3Q14573 2671 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 HIVEP1P15822 2718 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 IGLV3-9A0A075B6K5 115 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 A0A1W2PPW3 197 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 FAM183AA6NL82 134 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 CLPTM1O96005 669 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 F12P00748 615 aaPredicted RBP12.49□□□□□ -0.41
VRK3-206ENST00000594090 ADRA2AP08913 450 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 FOSL1P15407 271 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 ZNF823P16415 610 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 ALDH3B1P43353 468 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 KLF3P57682 345 aaPredicted RBP12.49□□□□□ -0.41
VRK3-206ENST00000594090 PPP1CBP62140 327 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 MAD2L1BPQ15013 274 aaPredicted RBP12.49□□□□□ -0.41
VRK3-206ENST00000594090 ELFN2Q5R3F8 820 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 SPATA46Q5T0L3 261 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 ARL9Q6T311 187 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 CLEC2AQ6UVW9 174 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 C1orf174Q8IYL3 243 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 ZCCHC24Q8N2G6 241 aaKnown RBP12.49□□□□□ -0.41
VRK3-206ENST00000594090 SLC7A6Q92536 515 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 C18orf12Q96KH6 178 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 COQ7Q99807 217 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 CDADC1Q9BWV3 514 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 RAB1BQ9H0U4 201 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 MED20Q9H944 212 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 ELOVL3Q9HB03 270 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 SLC25A19Q9HC21 320 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 MED13LQ71F56 2210 aa12.49□□□□□ -0.41
VRK3-206ENST00000594090 TVP23AA6NH52 213 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 H3BNX3 289 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 H3BSA7 217 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 SURF4O15260 269 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 NGFP01138 241 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 HMGN1P05114 100 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 DBHP09172 617 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 PSKH1P11801 424 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 PAICSP22234 425 aaKnown RBP12.48□□□□□ -0.41
VRK3-206ENST00000594090 CRISP1P54107 249 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 DSCR9P59020 149 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 SELENOVP59797 346 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 TMEM236Q5W0B7 351 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 ZFP1Q6P2D0 407 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 OR6K6Q8NGW6 343 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 OR2AJ1Q8NGZ0 328 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 SLC25A40Q8TBP6 338 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 MARS2Q96GW9 593 aaKnown RBP12.48□□□□□ -0.41
VRK3-206ENST00000594090 CENPNQ96H22 339 aaPredicted RBP12.48□□□□□ -0.41
VRK3-206ENST00000594090 RAB3IPQ96QF0 476 aaPredicted RBP12.48□□□□□ -0.41
VRK3-206ENST00000594090 HCAR1Q9BXC0 346 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 OR2J1Q9GZK6 312 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 SEMA6AQ9H2E6 1030 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 TPK1Q9H3S4 243 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 MS4A5Q9H3V2 200 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 KRT84Q9NSB2 600 aa12.48□□□□□ -0.41
VRK3-206ENST00000594090 IGHV4-30-2A0A087WSY4 118 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 MITFO75030 526 aaPredicted RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 ERCC1P07992 297 aaPredicted RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 INHBBP09529 407 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 CSF3P09919 207 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 FMO3P31513 532 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 MPV17P39210 176 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 RPS27P42677 84 aaKnown RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 ESRRGP62508 458 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 NKPD1Q17RQ9 610 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 ALKBH6Q3KRA9 238 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 ZNF718Q3SXZ3 478 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 TMEM255AQ5JRV8 349 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 LINC01590Q5TEZ4 76 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 MBNL2Q5VZF2 373 aaKnown RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 KDM4DQ6B0I6 523 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 TMEM154Q6P9G4 183 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 ZNF511Q8NB15 262 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 KLF14Q8TD94 323 aaPredicted RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 IPCEF1Q8WWN9 437 aaPredicted RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 NEU4Q8WWR8 484 aaPredicted RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 PTP4A1Q93096 173 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 OTULINQ96BN8 352 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 MAP6Q96JE9 813 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 DCLRE1CQ96SD1 692 aaKnown RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 PITX2Q99697 317 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 ATF6BQ99941 703 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 PKP2Q99959 881 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 TEX12Q9BXU0 123 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 WDR76Q9H967 626 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 PNRC2Q9NPJ4 139 aaKnown RBP12.47□□□□□ -0.41
VRK3-206ENST00000594090 TBCCD1Q9NVR7 557 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 SLCO1C1Q9NYB5 712 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 TAAR3PQ9P1P4 343 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 OAZ3Q9UMX2 235 aa12.47□□□□□ -0.41
VRK3-206ENST00000594090 GRIP1Q9Y3R0 1128 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms