RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 TMIGD3P0DMS9 266 aaPredicted RBP19.55■□□□□ 0.72
ATG4D-209ENST00000588857 TIMP3P35625 211 aa19.55■□□□□ 0.72
ATG4D-209ENST00000588857 LSM3P62310 102 aaKnown RBP19.55■□□□□ 0.72
ATG4D-209ENST00000588857 TLE1Q04724 770 aa19.55■□□□□ 0.72
ATG4D-209ENST00000588857 SLC3A1Q07837 685 aa19.55■□□□□ 0.72
ATG4D-209ENST00000588857 TAF13Q15543 124 aa19.55■□□□□ 0.72
ATG4D-209ENST00000588857 DMKNQ6E0U4 476 aaPredicted RBP19.55■□□□□ 0.72
ATG4D-209ENST00000588857 TFAP2EQ6VUC0 442 aa19.55■□□□□ 0.72
ATG4D-209ENST00000588857 RHOUQ7L0Q8 258 aa19.55■□□□□ 0.72
ATG4D-209ENST00000588857 RPL3LQ92901 407 aaKnown RBP19.55■□□□□ 0.72
ATG4D-209ENST00000588857 TMED9Q9BVK6 235 aa19.55■□□□□ 0.72
ATG4D-209ENST00000588857 ZNF878C9JN71 531 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 CD53P19397 219 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 MPGP29372 298 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 OPRL1P41146 370 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 SH3BGRP55822 239 aaPredicted RBP19.54■□□□□ 0.72
ATG4D-209ENST00000588857 RPS25P62851 125 aaKnown RBP19.54■□□□□ 0.72
ATG4D-209ENST00000588857 FOXF2Q12947 444 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 CDK5R1Q15078 307 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 CNPY1Q3B7I2 92 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 KLHL24Q6TFL4 600 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 SLC16A14Q7RTX9 510 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 SMIM19Q96E16 107 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 FBXO17Q96EF6 278 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 EXOSC4Q9NPD3 245 aaKnown RBP19.54■□□□□ 0.72
ATG4D-209ENST00000588857 SSR3Q9UNL2 185 aa19.54■□□□□ 0.72
ATG4D-209ENST00000588857 SF3B6Q9Y3B4 125 aaKnown RBP19.54■□□□□ 0.72
ATG4D-209ENST00000588857 PCBD1P61457 104 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 ZNF544Q6NX49 715 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 VWA1Q6PCB0 445 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 GDPGP1Q6ZNW5 385 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 OR10S1Q8NGN2 331 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 PYCARD-AS1I3L0S3 204 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 SLC22A1O15245 554 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 TOXO94900 526 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 CNOT4O95628 575 aaKnown RBP19.53■□□□□ 0.72
ATG4D-209ENST00000588857 HLA-DPB1P04440 258 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 GDI2P50395 445 aaKnown RBP19.53■□□□□ 0.72
ATG4D-209ENST00000588857 FOXG1P55316 489 aaPredicted RBP19.53■□□□□ 0.72
ATG4D-209ENST00000588857 TRAM1Q15629 374 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 ZNF627Q7L945 461 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 SYT9Q86SS6 491 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 SKA3Q8IX90 412 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 RPRMLQ8N4K4 120 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 GHSRQ92847 366 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 WACQ9BTA9 647 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 PLSCR4Q9NRQ2 329 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 PROCRQ9UNN8 238 aa19.53■□□□□ 0.72
ATG4D-209ENST00000588857 LRRTM2O43300 516 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 GPX5O75715 221 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 TNFSF13O75888 250 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 CD1AP06126 327 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 GLI4P10075 376 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 HSD11B1P28845 292 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 CRYBB2P43320 205 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 NANOS3P60323 173 aaKnown RBP19.52■□□□□ 0.71
ATG4D-209ENST00000588857 VBP1P61758 197 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 HIST1H3AP68431 136 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 SCRN3Q0VDG4 424 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 ALKBH1Q13686 389 aaKnown RBP19.52■□□□□ 0.71
ATG4D-209ENST00000588857 HIST2H3PS2Q5TEC6 136 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 FDX2Q6P4F2 183 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 HIST2H3AQ71DI3 136 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 BTLAQ7Z6A9 289 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 HSD17B8Q92506 261 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 RNF166Q96A37 237 aaPredicted RBP19.52■□□□□ 0.71
ATG4D-209ENST00000588857 TINAGQ9UJW2 476 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 TIMM10BQ9Y5J6 103 aa19.52■□□□□ 0.71
ATG4D-209ENST00000588857 A0A096LPE4 126 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 A0A1W2PPZ6 126 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 GRB2P62993 217 aaKnown RBP19.51■□□□□ 0.71
ATG4D-209ENST00000588857 TGFBR3Q03167 851 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 ZNF829Q3KNS6 432 aaPredicted RBP19.51■□□□□ 0.71
ATG4D-209ENST00000588857 ANKRD16Q6P6B7 361 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 Q6ZT83 130 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 MS4A15Q8N5U1 240 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 OR2G2Q8NGZ5 317 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 PGLYRP3Q96LB9 341 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 CENPOQ9BU64 300 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 NIPAL2Q9H841 368 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 PNRC2Q9NPJ4 139 aaKnown RBP19.51■□□□□ 0.71
ATG4D-209ENST00000588857 PLEK2Q9NYT0 353 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 FBXL3Q9UKT7 428 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 GTF2A1LQ9UNN4 478 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 SLC5A6Q9Y289 635 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 R4GMQ9 66 aa19.51■□□□□ 0.71
ATG4D-209ENST00000588857 BAHCC1Q9P281 2608 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 SGCEO43556 437 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 GPRIN2O60269 458 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 ATE1O95260 518 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 ITGA5P08648 1049 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 CEACAM8P31997 349 aaPredicted RBP19.5■□□□□ 0.71
ATG4D-209ENST00000588857 DCTDP32321 178 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 NCS1P62166 190 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 FABP5Q01469 135 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 SLC36A2Q495M3 483 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 ELFN2Q5R3F8 820 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 OR1K1Q8NGR3 316 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 OR5AK2Q8NH90 309 aa19.5■□□□□ 0.71
ATG4D-209ENST00000588857 RPS4Y2Q8TD47 263 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms