RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 PTCHD4Q6ZW05 846 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 RFPL4BQ6ZWI9 263 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 VASH1Q7L8A9 365 aaPredicted RBP10.57□□□□□ -0.72
SS18-225ENST00000585121 DHFR2Q86XF0 187 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 OR52L1Q8NGH7 329 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 IPCEF1Q8WWN9 437 aaPredicted RBP10.57□□□□□ -0.72
SS18-225ENST00000585121 SAMD8Q96LT4 415 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 DIRC2Q96SL1 478 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 SAP30LQ9HAJ7 183 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 SRA1Q9HD15 236 aaKnown RBP10.57□□□□□ -0.72
SS18-225ENST00000585121 TBCCD1Q9NVR7 557 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 ASH2LQ9UBL3 628 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 H0YHG0 523 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 SPRY3O43610 288 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 CDC14BO60729 498 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 NGFP01138 241 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 TFP02787 698 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 SRD5A1P18405 259 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 IGFBP5P24593 272 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 CRYBB2P43320 205 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 GSSP48637 474 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 FXYD6P3P58550 94 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 TRIM25Q14258 630 aaKnown RBP10.56□□□□□ -0.72
SS18-225ENST00000585121 KCNMB1Q16558 191 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 HFEQ30201 348 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 FAM98BQ52LJ0 330 aaKnown RBP10.56□□□□□ -0.72
SS18-225ENST00000585121 FAM120AOSQ5T036 256 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.56□□□□□ -0.72
SS18-225ENST00000585121 GJC3Q8NFK1 279 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 OR4K13Q8NH42 304 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 OR1F12Q8NHA8 337 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 YIPF5Q969M3 257 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 ELMOD3Q96FG2 381 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 TIMD4Q96H15 378 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 LRGUKQ96M69 825 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 CDADC1Q9BWV3 514 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 CADM1Q9BY67 442 aaKnown RBP10.56□□□□□ -0.72
SS18-225ENST00000585121 TRIM15Q9C019 465 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 NARFLQ9H6Q4 476 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 MAGIXQ9H6Y5 334 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 ATPIF1Q9UII2 106 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 ZDHHC8Q9ULC8 765 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 PRPF19Q9UMS4 504 aaKnown RBP10.56□□□□□ -0.72
SS18-225ENST00000585121 B9D1Q9UPM9 204 aa10.56□□□□□ -0.72
SS18-225ENST00000585121 OR6C6A6NF89 314 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 B4DSR2 109 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 CLDN25C9JDP6 229 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 CCNB2O95067 398 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 MPZL1O95297 269 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 HLA-DQA2P01906 255 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 HIST1H1CP16403 213 aaKnown RBP10.55□□□□□ -0.72
SS18-225ENST00000585121 ATP6V1B2P21281 511 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 TNFSF4P23510 183 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 IL2RGP31785 369 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 RGS6P49758 472 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 HMGA2P52926 109 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 CDH15P55291 814 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 SLC3A1Q07837 685 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 LCN8Q6JVE9 175 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 PGBD2Q6P3X8 592 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 ZNF620Q6ZNG0 422 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 USP51Q70EK9 711 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 OR5L1Q8NGL2 311 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 OR2AJ1Q8NGZ0 328 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 TSSK2Q96PF2 358 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 DCLRE1CQ96SD1 692 aaKnown RBP10.55□□□□□ -0.72
SS18-225ENST00000585121 NMNAT3Q96T66 252 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 RACGAP1Q9H0H5 632 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 RPRD1BQ9NQG5 326 aaKnown RBP10.55□□□□□ -0.72
SS18-225ENST00000585121 LYVE1Q9Y5Y7 322 aa10.55□□□□□ -0.72
SS18-225ENST00000585121 J3QW42 95 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 RP2O75695 350 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 IGHV1-46P01743 117 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 ANPEPP15144 967 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 MMP15P51511 669 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 CR1LQ2VPA4 569 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 GLCCI1Q86VQ1 547 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 CLDND2Q8NHS1 167 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 GTF3AQ92664 365 aaKnown RBP10.54□□□□□ -0.72
SS18-225ENST00000585121 RAB1CQ92928 201 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 PTP4A1Q93096 173 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 C1orf159Q96HA4 380 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 SOX7Q9BT81 388 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 HDHD2Q9H0R4 259 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 REEP1Q9H902 201 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 TMEFF2Q9UIK5 374 aaPredicted RBP10.54□□□□□ -0.72
SS18-225ENST00000585121 CDH10Q9Y6N8 788 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 COL6A5A8TX70 2615 aa10.54□□□□□ -0.72
SS18-225ENST00000585121 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.54□□□□□ -0.721e-7■■■■□ 26.1
SS18-225ENST00000585121 IGLV1-36A0A0B4J1U3 117 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 RER1O15258 196 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 MAGEA2P43356 314 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 MVKQ03426 396 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 PSG7Q13046 419 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 CCDC92Q53HC0 331 aaPredicted RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 CLEC12AQ5QGZ9 265 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 SLC35F1Q5T1Q4 408 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 OTPQ5XKR4 325 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 PEG10Q86TG7 708 aaKnown RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 OR6V1Q8N148 313 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms