RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TMEM159Q96B96 161 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 ZMYND19Q96E35 227 aaPredicted RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 TSSK3Q96PN8 268 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 ZNF317Q96PQ6 595 aaPredicted RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 TBX15Q96SF7 602 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 CHID1Q9BWS9 393 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 REEP4Q9H6H4 257 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 RANBP3Q9H6Z4 567 aaPredicted RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 CSNK1G1Q9HCP0 422 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 FGF20Q9NP95 211 aaPredicted RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 ZNF446Q9NWS9 450 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 SLC2A6Q9UGQ3 507 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 CIDEBQ9UHD4 219 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 ENPP5Q9UJA9 477 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 COPS3Q9UNS2 423 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 TDRD6O60522 2096 aaKnown RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 DYNC2H1Q8NCM8 4307 aaKnown RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 TRPC5OSA6NMA1 111 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 A8MUA0 341 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 C10orf142B7Z368 130 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 DPM1O60762 260 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 UGT2B17O75795 530 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 CBR3O75828 277 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 NXPH4O95158 308 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 LYPD3O95274 346 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 ALDOBP05062 364 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 NR2C1P13056 603 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 HSD17B1P14061 328 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 NQO2P16083 231 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 TCN2P20062 427 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 COX5AP20674 150 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 UGT1A4P22310 534 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 PDHA2P29803 388 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 SLC1A1P43005 524 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 NPBWR2P48146 333 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 CX3CR1P49238 355 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 CCNHP51946 323 aaPredicted RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 KRTAP10-2P60368 255 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 ERVK-25P63136 954 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 LRRC63Q05C16 580 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 DPTQ07507 201 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 ITGB3BPQ13352 177 aaPredicted RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 DPYSL3Q14195 570 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 ZNF235Q14590 738 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 UPP1Q16831 310 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 MUC21Q5SSG8 566 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 ZNF57Q68EA5 555 aaPredicted RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 REP15Q6BDI9 236 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 OR52E8Q6IFG1 317 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 XKRXQ6PP77 449 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 SLC25A48Q6ZT89 311 aaKnown RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 SNX20Q7Z614 316 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 JAGN1Q8N5M9 183 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 TRAM1L1Q8N609 369 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 TTC29Q8NA56 475 aaPredicted RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 TCP10LQ8TDR4 215 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 IL1F10Q8WWZ1 152 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 MRPS31Q92665 395 aaKnown RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 MRGPRFQ96AM1 343 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 APH1AQ96BI3 265 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 JSRP1Q96MG2 331 aaPredicted RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 ZNF396Q96N95 335 aaPredicted RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 PGLYRP2Q96PD5 576 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 CSPG4P5Q96PW8 444 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 NAT10Q9H0A0 1025 aaKnown RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 RETNQ9HD89 108 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 PRSS16Q9NQE7 514 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 ZFP57Q9NU63 452 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 THUMPD1Q9NXG2 353 aaKnown RBP4.69□□□□□ -1.66
VPS53-219ENST00000576019 DDX19BQ9UMR2 479 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 ERVW-1Q9UQF0 538 aa4.69□□□□□ -1.66
VPS53-219ENST00000576019 DNAH1Q9P2D7 4330 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 IGKV6-21A0A0C4DH24 114 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 WDR91A4D1P6 747 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 D6RAR5 112 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 RAD1O60671 282 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 SMC2O95347 1197 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 CD48P09326 243 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 PAX1P15863 534 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 MGMTP16455 207 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 ATF6P18850 670 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 ACVR1BP36896 505 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 GSSP48637 474 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 KPNA2P52292 529 aaKnown RBP4.68□□□□□ -1.66
VPS53-219ENST00000576019 ARHGDIAP52565 204 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 PLTPP55058 493 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 DSCR9P59020 149 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 SKP1P63208 163 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 MRPS22P82650 360 aaKnown RBP4.68□□□□□ -1.66
VPS53-219ENST00000576019 ARL16Q0P5N6 197 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 OR5I1Q13606 314 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 OXA1LQ15070 435 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 TSC22D1Q15714 1073 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 CYP51A1Q16850 503 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 SLC22A6Q4U2R8 563 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 LINC00242Q5T6M2 205 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 LCE5AQ5TCM9 118 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 NADSYN1Q6IA69 706 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 Q6ZSR9 355 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 HDDC2Q7Z4H3 204 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms