RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 KCNAB3O43448 404 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 DOK2O60496 412 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 HTR5AP47898 357 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 LCN6P62502 163 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 TRAM2Q15035 370 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 VASH1Q7L8A9 365 aaPredicted RBP17.72■□□□□ 0.43
VPS53-216ENST00000574029 RNF113BQ8IZP6 322 aaKnown RBP17.72■□□□□ 0.43
VPS53-216ENST00000574029 BCL6BQ8N143 479 aaPredicted RBP17.72■□□□□ 0.43
VPS53-216ENST00000574029 OR2T12Q8NG77 320 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 OR13C2Q8NGS9 318 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 ITLN1Q8WWA0 313 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 HAVCR1Q96D42 359 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 CMBLQ96DG6 245 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 ZNF48Q96MX3 618 aaPredicted RBP17.72■□□□□ 0.43
VPS53-216ENST00000574029 C1QTNF5Q9BXJ0 243 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 FAM107BQ9H098 131 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 GID8Q9NWU2 228 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 RHCGQ9UBD6 479 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 PPP1R3CQ9UQK1 317 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 STARD10Q9Y365 291 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 FFAR1O14842 300 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 SGCEO43556 437 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 AHCYL1O43865 530 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 YAP1P46937 504 aaKnown RBP17.71■□□□□ 0.43
VPS53-216ENST00000574029 LZICQ8WZA0 190 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 PTP4A1Q93096 173 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 COG8Q96MW5 612 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 DUX5Q96PT3 197 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 MRI1Q9BV20 369 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 FNDC11Q9BVV2 318 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 GRHPRQ9UBQ7 328 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 ADAM18Q9Y3Q7 739 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 SNX13Q9Y5W8 968 aa17.71■□□□□ 0.43
VPS53-216ENST00000574029 MEGF8Q7Z7M0 2845 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 ELOVL7A1L3X0 281 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 J3KTA2 159 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 SURF4O15260 269 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 CD14P08571 375 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 COX4I1P13073 169 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 MDH2P40926 338 aaKnown RBP17.7■□□□□ 0.42
VPS53-216ENST00000574029 PAX8Q06710 450 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 BAMBIQ13145 260 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 MESTQ5EB52 335 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 ACOT11Q8WXI4 607 aaPredicted RBP17.7■□□□□ 0.42
VPS53-216ENST00000574029 OR2V2Q96R30 315 aa17.7■□□□□ 0.42
VPS53-216ENST00000574029 A0A087WUU8 490 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 TEX13CA0A0J9YWL9 993 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 TMEM178BH3BS89 294 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 CDC42EP2O14613 210 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 IFNW1P05000 195 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 RNASE1P07998 156 aaKnown RBP17.69■□□□□ 0.42
VPS53-216ENST00000574029 ZNF26P17031 533 aaPredicted RBP17.69■□□□□ 0.42
VPS53-216ENST00000574029 RPL4P36578 427 aaKnown RBP17.69■□□□□ 0.42
VPS53-216ENST00000574029 ERFP50548 548 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 MMP16P51512 607 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 AQP6Q13520 282 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 ESCO2Q56NI9 601 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 TMPRSS11FQ6ZWK6 438 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 MBOAT2Q6ZWT7 520 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 FAM122BQ7Z309 247 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 VTCN1Q7Z7D3 282 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 MUC20Q8N307 709 aaPredicted RBP17.69■□□□□ 0.42
VPS53-216ENST00000574029 POU5F2Q8N7G0 328 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 Q96M85 177 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 GCM1Q9NP62 436 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 OR5V1Q9UGF6 321 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 LRCH1Q9Y2L9 728 aa17.69■□□□□ 0.42
VPS53-216ENST00000574029 PRSS37A4D1T9 235 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 OR6C6A6NF89 314 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 CEACAM18A8MTB9 384 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 CLDN34H7C241 214 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 IFNL4K9M1U5 179 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 XKRYO14609 159 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 WNT2P09544 360 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 PPIAL4GP0DN37 164 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 RAC2P15153 192 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 CTLA4P16410 223 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 CPT2P23786 658 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 CD80P33681 288 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 GPR4P46093 362 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 PAX2Q02962 417 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 ZBED5Q49AG3 693 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 TBPL2Q6SJ96 375 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 ZNF730Q6ZMV8 503 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 SLC7A6Q92536 515 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 RCN3Q96D15 328 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 ARL2BPQ9Y2Y0 163 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 MGAM2Q2M2H8 2515 aa17.68■□□□□ 0.42
VPS53-216ENST00000574029 J3QW42 95 aa17.67■□□□□ 0.42
VPS53-216ENST00000574029 PRDX6P30041 224 aa17.67■□□□□ 0.42
VPS53-216ENST00000574029 LSM6P62312 80 aaKnown RBP17.67■□□□□ 0.42
VPS53-216ENST00000574029 CCDC92Q53HC0 331 aaPredicted RBP17.67■□□□□ 0.42
VPS53-216ENST00000574029 C9orf139Q6ZV77 190 aa17.67■□□□□ 0.42
VPS53-216ENST00000574029 OR1F12Q8NHA8 337 aa17.67■□□□□ 0.42
VPS53-216ENST00000574029 CMTM5Q96DZ9 223 aa17.67■□□□□ 0.42
VPS53-216ENST00000574029 ZNF570Q96NI8 536 aa17.67■□□□□ 0.42
VPS53-216ENST00000574029 MS4A7Q9GZW8 240 aaPredicted RBP17.67■□□□□ 0.42
VPS53-216ENST00000574029 UNKLQ9H9P5 680 aaKnown RBP17.67■□□□□ 0.42
VPS53-216ENST00000574029 EFCAB1Q9HAE3 211 aa17.67■□□□□ 0.42
VPS53-216ENST00000574029 ASH2LQ9UBL3 628 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms