RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CTXN2P0C2S0 81 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 PGAM2P15259 253 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 PTNP21246 168 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 NT5EP21589 574 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 CTSSP25774 331 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 HSD11B1P28845 292 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 ATP1B3P54709 279 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 ST8SIA6P61647 398 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 TRA2BP62995 288 aaKnown RBP9.81□□□□□ -0.84
CLK3-226ENST00000569406 ZNF77Q15935 545 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 SYT14P1Q58G82 188 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 ARL9Q6T311 187 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 STEAP2Q8NFT2 490 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 OR4C15Q8NGM1 316 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 PPP1R1CQ8WVI7 109 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 FCAMRQ8WWV6 532 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 TIFAQ96CG3 184 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 WFIKKN1Q96NZ8 548 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 FOXJ3Q9UPW0 622 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 TGIF2-C20orf24A0A0A6YYL0 155 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 TMEM129A0AVI4 362 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 FAM221AA4D161 298 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 ANTXRLA6NF34 631 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 TVP23AA6NH52 213 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 ZNF705FA8MVS1 300 aaPredicted RBP9.81□□□□□ -0.84
CLK3-226ENST00000569406 TRDCB7Z8K6 153 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 TIMP1P01033 207 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 AMBPP02760 352 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 ZNF705DP0CH99 300 aaPredicted RBP9.81□□□□□ -0.84
CLK3-226ENST00000569406 ZNF705BP0CI00 300 aaPredicted RBP9.81□□□□□ -0.84
CLK3-226ENST00000569406 NID1P14543 1247 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 GPR4P46093 362 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 RABIFP47224 123 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 POLR2HP52434 150 aaKnown RBP9.81□□□□□ -0.84
CLK3-226ENST00000569406 TMEM115Q12893 351 aaPredicted RBP9.81□□□□□ -0.84
CLK3-226ENST00000569406 KRTCAP3Q53RY4 240 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 P4HA3Q7Z4N8 544 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 POLR2J3Q9H1A7 115 aaKnown RBP9.81□□□□□ -0.84
CLK3-226ENST00000569406 OR10A5Q9H207 317 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 ZDHHC6Q9H6R6 413 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 GPATCH2Q9NW75 528 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 CXXC1Q9P0U4 656 aaPredicted RBP9.81□□□□□ -0.84
CLK3-226ENST00000569406 SLC13A4Q9UKG4 626 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 DOCK9Q9BZ29 2069 aa9.81□□□□□ -0.84
CLK3-226ENST00000569406 LIMS3P0CW19 117 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 LIMS4P0CW20 117 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 OR13C7P0DN81 318 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 PTH2RP49190 550 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 SNRPD1P62314 119 aaKnown RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 RPS26P62854 115 aaKnown RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 RAE1P78406 368 aaKnown RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 MTAPQ13126 283 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 SCGB2A2Q13296 93 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 ZNF345Q14585 488 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 NKAIN1Q4KMZ8 207 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 SYT13Q7L8C5 426 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 CEACAM19Q7Z692 300 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 LMNTD1Q8N9Z9 388 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 KREMEN2Q8NCW0 462 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 OR5L1Q8NGL2 311 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 SLC25A43Q8WUT9 341 aaPredicted RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 LMAN1LQ9HAT1 526 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 FLVCR1Q9Y5Y0 555 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 HS3ST3B1Q9Y662 390 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 KIAA0100Q14667 2235 aaKnown RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 CD5P06127 495 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 PGA4P0DJD7 388 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 PGA5P0DJD9 388 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 OSMP13725 252 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 ATP1B2P14415 290 aaPredicted RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 AMD1P17707 334 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 LPAR6P43657 344 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 SLC22A25Q6T423 547 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 Q6ZVL8 140 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 LSRQ86X29 649 aaPredicted RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 MCEMP1Q8IX19 187 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 RSPRY1Q96DX4 576 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 PIK3IP1Q96FE7 263 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 SHDQ96IW2 340 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 ZNF582Q96NG8 517 aaPredicted RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 CHST6Q9GZX3 395 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 CHST8Q9H2A9 424 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 MRPL22Q9NWU5 206 aaKnown RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 B3GAT1Q9P2W7 334 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 FARSAQ9Y285 508 aaKnown RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 UNC119BA6NIH7 251 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 XRCC3O43542 346 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 IGFALSP35858 605 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 ZNF41P51814 821 aaPredicted RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 NTHL1P78549 312 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 HAGHQ16775 308 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 IQCJQ1A5X6 159 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 GAB4Q2WGN9 574 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 C17orf64Q86WR6 236 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 OR13C5Q8NGS8 318 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 OR13C2Q8NGS9 318 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 CYB5D2Q8WUJ1 264 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 HAS2Q92819 552 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 SGK2Q9HBY8 427 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 TMEM100Q9NV29 134 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms