RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZNF718Q3SXZ3 478 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 ELFN2Q5R3F8 820 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 LURAP1LQ8IV03 231 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 IQCF1Q8N6M8 205 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 OR9Q1Q8NGQ5 310 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 OR1F12Q8NHA8 337 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 PYDC1Q8WXC3 89 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 LRTOMTQ8WZ04 291 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 OTULINQ96BN8 352 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 COQ7Q99807 217 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 SYT3Q9BQG1 590 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 TMUB1Q9BVT8 246 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 MRPL37Q9BZE1 423 aaKnown RBP11.18□□□□□ -0.62
CLK3-224ENST00000568605 SLC25A19Q9HC21 320 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 TUBG2Q9NRH3 451 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 SLCO1C1Q9NYB5 712 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 CGGBP1Q9UFW8 167 aaPredicted RBP11.18□□□□□ -0.62
CLK3-224ENST00000568605 DUSP13Q9UII6 198 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 LHFPL6Q9Y693 200 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 COMMD3-BMI1R4GMX3 469 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 ACANP16112 2415 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 FAM171A2A8MVW0 826 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 RER1O15258 196 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 PRODHO43272 600 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 GPANK1O95872 356 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 ZNF250P15622 560 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 IGFBP5P24593 272 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 ENTPD1P49961 510 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 CRISP1P54107 249 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 MST1LQ2TV78 715 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 ZMAT1Q5H9K5 638 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 SLC18B1Q6NT16 456 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 RFPL4BQ6ZWI9 263 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 AMIGO2Q86SJ2 522 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 NEU4Q8WWR8 484 aaPredicted RBP11.17□□□□□ -0.62
CLK3-224ENST00000568605 C18orf12Q96KH6 178 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 C4orf45Q96LM5 186 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 SORCS2Q96PQ0 1159 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 DDOQ99489 341 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 DOK1Q99704 481 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 ATF6BQ99941 703 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 RHNO1Q9BSD3 238 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 NMNAT2Q9BZQ4 307 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 TBCCD1Q9NVR7 557 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 CYB5R1Q9UHQ9 305 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 ORC6Q9Y5N6 252 aa11.17□□□□□ -0.62
CLK3-224ENST00000568605 TEP1Q99973 2627 aaKnown RBP11.16□□□□□ -0.62
CLK3-224ENST00000568605 IGLV3-9A0A075B6K5 115 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 PLSCR5A0PG75 271 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 SURF4O15260 269 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 NDUFS7O75251 213 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 F12P00748 615 aaPredicted RBP11.16□□□□□ -0.62
CLK3-224ENST00000568605 TFP02787 698 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 GYPBP06028 91 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 SPARCP09486 303 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 WNT5AP41221 380 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 DAPP51397 102 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 PPP1CBP62140 327 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 HIST1H3AP68431 136 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 CDK5Q00535 292 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 CCDC92Q53HC0 331 aaPredicted RBP11.16□□□□□ -0.62
CLK3-224ENST00000568605 ZNF362Q5T0B9 420 aaPredicted RBP11.16□□□□□ -0.62
CLK3-224ENST00000568605 HIST2H3PS2Q5TEC6 136 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 HIST2H3AQ71DI3 136 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 LINC00346Q8IVM7 164 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 ZNF101Q8IZC7 436 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 OR51L1Q8NGJ5 315 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 OR5L1Q8NGL2 311 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 STMN2Q93045 179 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 PITX2Q99697 317 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 RBM4BQ9BQ04 359 aaKnown RBP11.16□□□□□ -0.62
CLK3-224ENST00000568605 SEMA6AQ9H2E6 1030 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 MRPL22Q9NWU5 206 aaKnown RBP11.16□□□□□ -0.62
CLK3-224ENST00000568605 FZR1Q9UM11 496 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 OAZ3Q9UMX2 235 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 DYSFO75923 2080 aa11.16□□□□□ -0.62
CLK3-224ENST00000568605 TMEM129A0AVI4 362 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 FAM183AA6NL82 134 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 H7C1Q1 480 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 NDUFS8O00217 210 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 GLCEO94923 617 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 ADRA2AP08913 450 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 SLC25A16P16260 332 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 GGT2P36268 569 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 LIPAP38571 399 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 PDLIM4P50479 330 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 ERVS71-1P61550 626 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 RPS7P62081 194 aaKnown RBP11.15□□□□□ -0.62
CLK3-224ENST00000568605 SNAPC1Q16533 368 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 SLC35D3Q5M8T2 416 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 LCN1P1Q5VSP4 162 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 MBNL2Q5VZF2 373 aaKnown RBP11.15□□□□□ -0.62
CLK3-224ENST00000568605 OTPQ5XKR4 325 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 KDM4DQ6B0I6 523 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 ACSM5Q6NUN0 579 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 PLBD1Q6P4A8 553 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 TMEM154Q6P9G4 183 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 CORO6Q6QEF8 472 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 CFAP77Q6ZQR2 320 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 BIVMQ86UB2 503 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms