RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 LRRC30A6NM36 301 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 BLOC1S5-TXNDC5H3BN57 136 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 KPNA4O00629 521 aaPredicted RBP9.65□□□□□ -0.86
CLK3-222ENST00000568232 SPAG7O75391 227 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 FCN3O75636 299 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 FSTL3O95633 263 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 FBP1P09467 338 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 ACADSP16219 412 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 LBPP18428 481 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 SERPINB5P36952 375 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 ZNF133P52736 654 aaPredicted RBP9.65□□□□□ -0.86
CLK3-222ENST00000568232 DLX1P56177 255 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 NCALDP61601 193 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 ZNF181Q2M3W8 571 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 FAM27BQ5VT28 67 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 LINC00114Q6XXX2 140 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 VMO1Q7Z5L0 202 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 PNLDC1Q8NA58 520 aaKnown RBP9.65□□□□□ -0.86
CLK3-222ENST00000568232 NPEPL1Q8NDH3 523 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 BBS10Q8TAM1 723 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 ASB10Q8WXI3 467 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 APOPT1Q96IL0 206 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 ZIM3Q96PE6 472 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 B9D2Q9BPU9 175 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 PGPEP1Q9NXJ5 209 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 DNAJB11Q9UBS4 358 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.65□□□□□ -0.86
CLK3-222ENST00000568232 PCDHGB5Q9Y5G0 923 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 TIMM10BQ9Y5J6 103 aa9.65□□□□□ -0.86
CLK3-222ENST00000568232 V9GYY5 206 aaPredicted RBP9.65□□□□□ -0.86
CLK3-222ENST00000568232 ADARB2-AS1A8MUL3 147 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 MCIDASD6RGH6 385 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 MLNRO43193 412 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 ANP32DO95626 131 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 OPN1SWP03999 348 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 UMPSP11172 480 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 CD33P20138 364 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 ETV4P43268 484 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 KIR2DS4P43632 304 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 SRP9P49458 86 aaKnown RBP9.64□□□□□ -0.87
CLK3-222ENST00000568232 NPY4RP50391 375 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 UGT2B15P54855 530 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 RGS8P57771 180 aaPredicted RBP9.64□□□□□ -0.87
CLK3-222ENST00000568232 GUCY1A3Q02108 690 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 EMX1Q04741 257 aaPredicted RBP9.64□□□□□ -0.87
CLK3-222ENST00000568232 RGNQ15493 299 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 SFRP4Q6FHJ7 346 aaPredicted RBP9.64□□□□□ -0.87
CLK3-222ENST00000568232 OR2T2Q6IF00 324 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 C1orf94Q6P1W5 598 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 WDR93Q6P2C0 686 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 DHRS4L2Q6PKH6 230 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 ARL9Q6T311 187 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 CALHM3Q86XJ0 350 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 C1orf87Q8N0U7 546 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 C10orf111Q8N326 155 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 HDAC2Q92769 488 aaKnown RBP9.64□□□□□ -0.87
CLK3-222ENST00000568232 NMD3Q96D46 503 aaKnown RBP9.64□□□□□ -0.87
CLK3-222ENST00000568232 NUF2Q9BZD4 464 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 TBCCD1Q9NVR7 557 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 ERVK-18Q9QC07 812 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 RAB21Q9UL25 225 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 LYSTQ99698 3801 aa9.64□□□□□ -0.87
CLK3-222ENST00000568232 DNAH1Q9P2D7 4330 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 A0A1W2PRG6 482 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 C5orf58C9J3I9 102 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 OR10H3O60404 316 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 FBXO24O75426 580 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 THY1P04216 161 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 HLA-DPB1P04440 258 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 HIST1H2ABP04908 130 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 CST2P09228 141 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 ASAH2BP0C7U1 165 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 ETS2P15036 469 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 RPL18Q07020 188 aaKnown RBP9.63□□□□□ -0.87
CLK3-222ENST00000568232 LRRC74AQ0VAA2 488 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 LY6EQ16553 131 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 SLC25A47Q6Q0C1 308 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 BTN2A1Q7KYR7 527 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 HIST3H2AQ7L7L0 130 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 PNKDQ8N490 385 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 CLDN22Q8N7P3 220 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 OR8G5Q8NG78 346 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 OR4F17Q8NGA8 305 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 OR13G1Q8NGZ3 307 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 NFKBIDQ8NI38 313 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 TCP10LQ8TDR4 215 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.63□□□□□ -0.87
CLK3-222ENST00000568232 SLC7A6Q92536 515 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 HIST1H2ACQ93077 130 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 PTP4A1Q93096 173 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 OR4F4Q96R69 305 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 CITED2Q99967 270 aaPredicted RBP9.63□□□□□ -0.87
CLK3-222ENST00000568232 C20orf27Q9GZN8 174 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 CNTD2Q9H8S5 307 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 SLCO1B3Q9NPD5 702 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 AIG1Q9NVV5 245 aa9.63□□□□□ -0.87
CLK3-222ENST00000568232 THUMPD1Q9NXG2 353 aaKnown RBP9.63□□□□□ -0.87
CLK3-222ENST00000568232 ELOVL7A1L3X0 281 aa9.62□□□□□ -0.87
CLK3-222ENST00000568232 C3orf84H3BNL1 204 aa9.62□□□□□ -0.87
CLK3-222ENST00000568232 ADAM20O43506 726 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms