RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GGT3PA6NGU5 568 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 STK17BO94768 372 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 TPPPO94811 219 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 ZNF43P17038 809 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 FKBP2P26885 142 aaKnown RBP18.02■□□□□ 0.47
CLN3-230ENST00000568076 ERP29P30040 261 aaKnown RBP18.02■□□□□ 0.47
CLN3-230ENST00000568076 AP3S2P59780 193 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 HIST3H3Q16695 136 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 GLT8D1Q68CQ7 371 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 FAAP20Q6NZ36 180 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 ZNF704Q6ZNC4 412 aaPredicted RBP18.02■□□□□ 0.47
CLN3-230ENST00000568076 SLC7A5P1Q8MH63 180 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 TMEM156Q8N614 296 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 OR56B4Q8NH76 319 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 C15orf40Q8WUR7 153 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 GIMAP1Q8WWP7 306 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 OR2M2Q96R28 347 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 ARRDC1-AS1Q9H2J1 176 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 C1orf198Q9H425 327 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 NIPAL2Q9H841 368 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 SEC61A2Q9H9S3 476 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 CGGBP1Q9UFW8 167 aaPredicted RBP18.02■□□□□ 0.47
CLN3-230ENST00000568076 MRPS18BQ9Y676 258 aaKnown RBP18.02■□□□□ 0.47
CLN3-230ENST00000568076 LOC102725191A0A1B0GVB3 256 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 ZIC3O60481 467 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 TTRP02766 147 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 ACSM4P0C7M7 580 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 MPLP40238 635 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 DNASE1L1P49184 302 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 SLC35A1P78382 337 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 TMEM244Q5VVB8 128 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 OLFML2AQ68BL7 652 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 TMEM53Q6P2H8 277 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 ARMC10Q8N2F6 343 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 HPF1Q9NWY4 346 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 NKIRAS2Q9NYR9 191 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 GDF2Q9UK05 429 aaPredicted RBP18.01■□□□□ 0.47
CLN3-230ENST00000568076 LOXL2Q9Y4K0 774 aa18.01■□□□□ 0.47
CLN3-230ENST00000568076 NAP1L6A6NFF2 107 aa18■□□□□ 0.47
CLN3-230ENST00000568076 UBCP0CG48 685 aaKnown RBP18■□□□□ 0.47
CLN3-230ENST00000568076 STOMP27105 288 aa18■□□□□ 0.47
CLN3-230ENST00000568076 DSCR4P56555 118 aaPredicted RBP18■□□□□ 0.47
CLN3-230ENST00000568076 H3F3AP84243 136 aa18■□□□□ 0.47
CLN3-230ENST00000568076 SPOCK1Q08629 439 aa18■□□□□ 0.47
CLN3-230ENST00000568076 ST3GAL2Q16842 350 aa18■□□□□ 0.47
CLN3-230ENST00000568076 ELFN2Q5R3F8 820 aa18■□□□□ 0.47
CLN3-230ENST00000568076 GLYATL3Q5SZD4 288 aa18■□□□□ 0.47
CLN3-230ENST00000568076 DCAF12Q5T6F0 453 aa18■□□□□ 0.47
CLN3-230ENST00000568076 PPP1R32Q7Z5V6 425 aa18■□□□□ 0.47
CLN3-230ENST00000568076 ZBTB44Q8NCP5 570 aa18■□□□□ 0.47
CLN3-230ENST00000568076 BEST4Q8NFU0 473 aa18■□□□□ 0.47
CLN3-230ENST00000568076 JSRP1Q96MG2 331 aaPredicted RBP18■□□□□ 0.47
CLN3-230ENST00000568076 BEX1Q9HBH7 125 aa18■□□□□ 0.47
CLN3-230ENST00000568076 ITGB1BP2Q9UKP3 347 aa18■□□□□ 0.47
CLN3-230ENST00000568076 CDV3Q9UKY7 258 aaKnown RBP18■□□□□ 0.47
CLN3-230ENST00000568076 PMS2P2O95744 297 aa18■□□□□ 0.47
CLN3-230ENST00000568076 PSMB1P20618 241 aaKnown RBP18■□□□□ 0.47
CLN3-230ENST00000568076 HTR2CP28335 458 aa18■□□□□ 0.47
CLN3-230ENST00000568076 Q0VFX4 171 aa18■□□□□ 0.47
CLN3-230ENST00000568076 TIPARPQ7Z3E1 657 aaKnown RBP18■□□□□ 0.47
CLN3-230ENST00000568076 LYPD6Q86Y78 171 aa18■□□□□ 0.47
CLN3-230ENST00000568076 ELMOD2Q8IZ81 293 aa18■□□□□ 0.47
CLN3-230ENST00000568076 ASCC1Q8N9N2 400 aaKnown RBP18■□□□□ 0.47
CLN3-230ENST00000568076 ZFAND1Q8TCF1 268 aa18■□□□□ 0.47
CLN3-230ENST00000568076 TRAF4Q9BUZ4 470 aaPredicted RBP18■□□□□ 0.47
CLN3-230ENST00000568076 DCDC2BA2VCK2 349 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 OR2M5A3KFT3 312 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 ALDOBP05062 364 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 QDPRP09417 244 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 CLDN6P56747 220 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 TNK1Q13470 666 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 RAET1LQ5VY80 246 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 CD276Q5ZPR3 534 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 ACTR6Q9GZN1 396 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 PBOV1Q9GZY1 135 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 DIABLOQ9NR28 239 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 SLC17A5Q9NRA2 495 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 TCFL5Q9UL49 500 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 RHBDD3Q9Y3P4 386 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 PHF3Q92576 2039 aaKnown RBP17.99■□□□□ 0.47
CLN3-230ENST00000568076 H7C417 338 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 HPXP02790 462 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 ZNF883P0CG24 379 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 CXCL3P19876 107 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 KLHL24Q6TFL4 600 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 HDDC2Q7Z4H3 204 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 OR10A4Q9H209 315 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 MTFP1Q9UDX5 166 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 PADI1Q9ULC6 663 aa17.99■□□□□ 0.47
CLN3-230ENST00000568076 TRAV18A0A075B6X5 111 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 ZNF726A6NNF4 738 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 PEX14O75381 377 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 SP9P0CG40 484 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 OTX2P32243 289 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 CLDN17P56750 224 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 GUCA2AQ02747 115 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 OR6M1Q8NGM8 313 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 PHF21AQ96BD5 680 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 FGGYQ96C11 551 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 DKKL1Q9UK85 242 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms