RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 HAVCR1Q96D42 359 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 KCTD14Q9BQ13 255 aaPredicted RBP15.82■□□□□ 0.12
CLN3-218ENST00000565688 TMEM106BQ9NUM4 274 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 IL19Q9UHD0 177 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 OPN4Q9UHM6 478 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 ATPIF1Q9UII2 106 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 RPS6KA6Q9UK32 745 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 FAM32AQ9Y421 112 aaKnown RBP15.82■□□□□ 0.12
CLN3-218ENST00000565688 TMEM89A2RUT3 159 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 SLC16A7O60669 478 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 KHDRBS3O75525 346 aaKnown RBP15.81■□□□□ 0.12
CLN3-218ENST00000565688 H1F0P07305 194 aaKnown RBP15.81■□□□□ 0.12
CLN3-218ENST00000565688 SBK2P0C263 348 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 TMEM155Q4W5P6 130 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 SPRNQ5BIV9 151 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 ADCK1Q86TW2 530 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 ZNF283Q8N7M2 679 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 PTP4A1Q93096 173 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 CMBLQ96DG6 245 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 ZMYND19Q96E35 227 aaPredicted RBP15.81■□□□□ 0.12
CLN3-218ENST00000565688 FAM46AQ96IP4 442 aaKnown RBP15.81■□□□□ 0.12
CLN3-218ENST00000565688 DCLRE1CQ96SD1 692 aaKnown RBP15.81■□□□□ 0.12
CLN3-218ENST00000565688 GPX7Q96SL4 187 aaPredicted RBP15.81■□□□□ 0.12
CLN3-218ENST00000565688 SLC6A7Q99884 636 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 NTN4Q9HB63 628 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 KRCC1Q9NPI7 259 aaPredicted RBP15.81■□□□□ 0.12
CLN3-218ENST00000565688 NRIP3Q9NQ35 241 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 VSX1Q9NZR4 365 aaPredicted RBP15.81■□□□□ 0.12
CLN3-218ENST00000565688 ASH2LQ9UBL3 628 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 SIGLEC7Q9Y286 467 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 STARD10Q9Y365 291 aa15.81■□□□□ 0.12
CLN3-218ENST00000565688 OR6C6A6NF89 314 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 PTP4A3O75365 173 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 FSHBP01225 129 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 RAC2P15153 192 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 RGS6P49758 472 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 FGD3Q5JSP0 725 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 C3orf56Q8N813 242 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 OR5L1Q8NGL2 311 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 OR1F12Q8NHA8 337 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 RASD2Q96D21 266 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 SYT4Q9H2B2 425 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 POFUT1Q9H488 388 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 RERGLQ9H628 205 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 PPP1R3CQ9UQK1 317 aa15.8■□□□□ 0.12
CLN3-218ENST00000565688 POLR3KQ9Y2Y1 108 aaPredicted RBP15.8■□□□□ 0.12
CLN3-218ENST00000565688 IFNL4K9M1U5 179 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 RHCEP18577 417 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 ZFP36P26651 326 aaKnown RBP15.79■□□□□ 0.12
CLN3-218ENST00000565688 NUDT2P50583 147 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 BTG1P62324 171 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 SLC27A4Q6P1M0 643 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 PGM2L1Q6PCE3 622 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 DPY19L2P2Q6ZN68 376 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 Q6ZR03 302 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 TSEN54Q7Z6J9 526 aaKnown RBP15.79■□□□□ 0.12
CLN3-218ENST00000565688 LRRC28Q86X40 367 aaPredicted RBP15.79■□□□□ 0.12
CLN3-218ENST00000565688 POP5Q969H6 163 aaKnown RBP15.79■□□□□ 0.12
CLN3-218ENST00000565688 RSRC1Q96IZ7 334 aaKnown RBP15.79■□□□□ 0.12
CLN3-218ENST00000565688 PATZ1Q9HBE1 687 aaKnown RBP15.79■□□□□ 0.12
CLN3-218ENST00000565688 DCAF16Q9NXF7 216 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 NDUFAF4Q9P032 175 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 EGFL7Q9UHF1 273 aa15.79■□□□□ 0.12
CLN3-218ENST00000565688 COA3Q9Y2R0 106 aaPredicted RBP15.79■□□□□ 0.12
CLN3-218ENST00000565688 TXNDC12O95881 172 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 NCK1P16333 377 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 RPS6KA3P51812 740 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 KCNMB1Q16558 191 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 HSP90B2PQ58FF3 399 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 C1orf94Q6P1W5 598 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 DNM1P34Q6PK57 102 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 FBXW12Q6X9E4 464 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 ITLN1Q8WWA0 313 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 OR2V2Q96R30 315 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 PLA2G12AQ9BZM1 189 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 ABCD2Q9UBJ2 740 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 SAMD4AQ9UPU9 718 aaKnown RBP15.78■□□□□ 0.12
CLN3-218ENST00000565688 AURKCQ9UQB9 309 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 POLR1DQ9Y2S0 133 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 IER3IP1Q9Y5U9 82 aa15.78■□□□□ 0.12
CLN3-218ENST00000565688 DYSFO75923 2080 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 UNC119BA6NIH7 251 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 SOCS2O14508 198 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 GMNNO75496 209 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 CPT2P23786 658 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 CRABP1P29762 137 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 MDH2P40926 338 aaKnown RBP15.77■□□□□ 0.12
CLN3-218ENST00000565688 OMPP47874 163 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 SLC6A9P48067 706 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 KRT72Q14CN4 511 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 ZMYND11Q15326 602 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 CCDC92Q53HC0 331 aaPredicted RBP15.77■□□□□ 0.12
CLN3-218ENST00000565688 ARMCX4Q5H9R4 360 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 RBMS3Q6XE24 437 aaKnown RBP15.77■□□□□ 0.12
CLN3-218ENST00000565688 MUC20Q8N307 709 aaPredicted RBP15.77■□□□□ 0.12
CLN3-218ENST00000565688 DEFB108BQ8NET1 73 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 GJC3Q8NFK1 279 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 SLC7A6Q92536 515 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 DVL3Q92997 716 aaPredicted RBP15.77■□□□□ 0.12
CLN3-218ENST00000565688 APOBEC3DQ96AK3 386 aaPredicted RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms