RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 MMP9P14780 707 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 IDO1P14902 403 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 SLC6A2P23975 617 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 GABRA5P31644 462 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 HTR5AP47898 357 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 NPY4RP50391 375 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 ERFP50548 548 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 POLR2JP52435 117 aaKnown RBP6.06□□□□□ -1.44
VPS4A-203ENST00000564399 ZNF133P52736 654 aaPredicted RBP6.06□□□□□ -1.44
VPS4A-203ENST00000564399 UGT2B15P54855 530 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 IFFO1Q0D2I5 559 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 STX3Q13277 289 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 SCARB2Q14108 478 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 ENTPD8Q5MY95 495 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 SLC35E4Q6ICL7 350 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 MSANTD1Q6ZTZ1 278 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 ARMC8Q8IUR7 673 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 SLC30A8Q8IWU4 369 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 GALNT4Q8N4A0 578 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 PNLDC1Q8NA58 520 aaKnown RBP6.06□□□□□ -1.44
VPS4A-203ENST00000564399 SMYD1Q8NB12 490 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 C19orf18Q8NEA5 215 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 OR13G1Q8NGZ3 307 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 HDAC2Q92769 488 aaKnown RBP6.06□□□□□ -1.44
VPS4A-203ENST00000564399 PTP4A1Q93096 173 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 ITPKCQ96DU7 683 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 COG8Q96MW5 612 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 RBP7Q96R05 134 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 SEPHS2Q99611 448 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 TOR3AQ9H497 397 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 EVA1AQ9H8M9 152 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 SMURF2Q9HAU4 748 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 ERVK-18Q9QC07 812 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 VPREB3Q9UKI3 123 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 SLC7A7Q9UM01 511 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 CAB39Q9Y376 341 aaPredicted RBP6.06□□□□□ -1.44
VPS4A-203ENST00000564399 USH1CQ9Y6N9 552 aa6.06□□□□□ -1.44
VPS4A-203ENST00000564399 COL7A1Q02388 2944 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 TRAPPC13A5PLN9 417 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 TRPC5OSA6NMA1 111 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 C12orf71A8MTZ7 269 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 F5H5P2 479 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 BIRC5O15392 142 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 TYROBPO43914 113 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 DOK2O60496 412 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 VIMP08670 466 aaKnown RBP6.05□□□□□ -1.44
VPS4A-203ENST00000564399 FBP1P09467 338 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 RAC2P15153 192 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 FUT1P19526 365 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 MSR1P21757 451 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 BGNP21810 368 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 AQP2P41181 271 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 ARF6P62330 175 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 TOP3AQ13472 1001 aaPredicted RBP6.05□□□□□ -1.44
VPS4A-203ENST00000564399 ZNF181Q2M3W8 571 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 NSUN5P1Q3KNT7 163 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 DEFB121Q5J5C9 76 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 OR2T2Q6IF00 324 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 SLC2A7Q6PXP3 512 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 SLC25A47Q6Q0C1 308 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 ZNF841Q6ZN19 808 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 CLDN22Q8N7P3 220 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 GOLGA6L1Q8N7Z2 621 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 BOLLQ8N9W6 283 aaKnown RBP6.05□□□□□ -1.44
VPS4A-203ENST00000564399 OR8G5Q8NG78 346 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 OR4S1Q8NGB4 309 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 OR6T1Q8NGN1 323 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 OR9I1Q8NGQ6 314 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 OR11L1Q8NGX0 322 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 ADAMTS16Q8TE57 1224 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 C10orf82Q8WW14 230 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 GTF2H4Q92759 462 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 PHF21AQ96BD5 680 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 MPP4Q96JB8 637 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 ZNF582Q96NG8 517 aaPredicted RBP6.05□□□□□ -1.44
VPS4A-203ENST00000564399 WWC2-AS2Q96NR7 200 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 PAIP1Q9H074 479 aaKnown RBP6.05□□□□□ -1.44
VPS4A-203ENST00000564399 SEMA6AQ9H2E6 1030 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 PPA2Q9H2U2 334 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 PTTG3PQ9NZH4 202 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 ZIM2Q9NZV7 527 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 FBLN5Q9UBX5 448 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 LGALS13Q9UHV8 139 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 HAO1Q9UJM8 370 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 TMCC3Q9ULS5 477 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 FOXJ3Q9UPW0 622 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 SIGLEC9Q9Y336 463 aa6.05□□□□□ -1.44
VPS4A-203ENST00000564399 ELOVL7A1L3X0 281 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 HDAC3O15379 428 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 ADAM20O43506 726 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 SGCEO43556 437 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 FSTL3O95633 263 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 PAHP00439 452 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 OPN1SWP03999 348 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 THY1P04216 161 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 HLA-DPB1P04440 258 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 COX5BP10606 129 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 KITP10721 976 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 PSMB10P40306 273 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 PMELP40967 661 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms