RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 COA3Q9Y2R0 106 aaPredicted RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 A0A1B0GTI1 187 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 EEF1E1-BLOC1S5C9J1V9 151 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 F5H0A9 414 aaPredicted RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 NSA2O95478 260 aaKnown RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 CD8AP01732 235 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 CTHP32929 405 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 OR1D4P47884 311 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 RGS19P49795 217 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 ADGRE4PQ86SQ3 457 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 CLRN3Q8NCR9 226 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 NUDCD2Q8WVJ2 157 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 NKX6-2Q9C056 277 aaPredicted RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 ADAM19Q9H013 955 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 SLC17A5Q9NRA2 495 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 SOHLH2Q9NX45 425 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 SDK1Q7Z5N4 2213 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 TCRBV21S2A2A0A5A6 115 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 GPR31O00270 319 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 EIF1AYO14602 144 aaKnown RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 HLA-DOBP13765 273 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 RPL27P61353 136 aaKnown RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 YPEL5P62699 121 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 FDX2Q6P4F2 183 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 OR1S2Q8NGQ3 325 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 CCNL2Q96S94 520 aaPredicted RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 ASF1BQ9NVP2 202 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 PCDHB10Q9UN67 800 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 NUP210LQ5VU65 1888 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 IGLV1-36A0A0B4J1U3 117 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 A0A1B0GW55 424 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 LOC107986453A0A1B0GWG9 222 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 WIPF3A6NGB9 483 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 STMND1H3BQB6 276 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 BCL2L11O43521 198 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 DUX4L2P0CJ85 424 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 DUX4L3P0CJ86 424 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 DUX4L4P0CJ87 422 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 DUX4L5P0CJ88 424 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 DUX4L6P0CJ89 424 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 DUX4L7P0CJ90 424 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 AKR1C4P17516 323 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 CD1CP29017 333 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 ZP2Q05996 745 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 FMODQ06828 376 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 FGL1Q08830 312 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 CCINQ13939 588 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 OR7A5Q15622 319 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 PDSS1Q5T2R2 415 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 KCTD18Q6PI47 426 aaPredicted RBP11.84□□□□□ -0.51
CLN3-210ENST00000563874 CATSPERDQ86XM0 798 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 ASB17Q8WXJ9 295 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 SLC39A1Q9NY26 324 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 DUX4Q9UBX2 424 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 TRAV36DV7A0A075B6V5 113 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 WDPCPO95876 746 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 S100A6P06703 90 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 GP1BAP07359 652 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 IL11P20809 199 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 CFPP27918 469 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 BDKRB2P30411 391 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 PPICP45877 212 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 PPIAP62937 165 aaKnown RBP11.84□□□□□ -0.51
CLN3-210ENST00000563874 SSBP1Q04837 148 aaKnown RBP11.84□□□□□ -0.51
CLN3-210ENST00000563874 SNTB1Q13884 538 aaKnown RBP11.84□□□□□ -0.51
CLN3-210ENST00000563874 ELOCQ15369 112 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 RNASE10Q5GAN6 216 aaKnown RBP11.84□□□□□ -0.51
CLN3-210ENST00000563874 MAMDC2Q7Z304 686 aaPredicted RBP11.84□□□□□ -0.51
CLN3-210ENST00000563874 FJX1Q86VR8 437 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 TMEM17Q86X19 198 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 MRGPRFQ96AM1 343 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 NUDT9Q9BW91 350 aa11.84□□□□□ -0.51
CLN3-210ENST00000563874 P2RY10O00398 339 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 SLC34A2O95436 690 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 SEMA4FO95754 770 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 MELTFP08582 738 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 IGFBP3P17936 291 aaPredicted RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 NR0B1P51843 470 aaKnown RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 GFERP55789 205 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 IL13RA1P78552 427 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 TRAPPC6BQ86SZ2 158 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 FAM219AQ8IW50 185 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 ADAD2Q8NCV1 583 aaKnown RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 INTS12Q96CB8 462 aaKnown RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 ZNF587Q96SQ5 575 aaPredicted RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 MBD2Q9UBB5 411 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 CNTRLQ7Z7A1 2325 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 C13orf42A0A1B0GVH6 325 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 OR2AT4A6NND4 320 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 SULT1C2O00338 296 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 OR2F2O95006 317 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 THEGLP0DJG4 465 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 IL12BP29460 328 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 CASRP41180 1078 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 PRKXP51817 358 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 OR2F1Q13607 317 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 ZNF519Q8TB69 540 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 CYYR1Q96J86 154 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 EDEM2Q9BV94 578 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms