RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TEKQ02763 1124 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 PCGF3Q3KNV8 242 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 MBNL2Q5VZF2 373 aaKnown RBP11.48□□□□□ -0.57
CLK3-213ENST00000563842 ZCCHC24Q8N2G6 241 aaKnown RBP11.48□□□□□ -0.57
CLK3-213ENST00000563842 ZNF786Q8N393 782 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 SLC26A10Q8NG04 563 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 OR2AJ1Q8NGZ0 328 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 OR1F12Q8NHA8 337 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 ABHD4Q8TB40 342 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 FEVQ99581 238 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 PLA2G12AQ9BZM1 189 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 HDHD2Q9H0R4 259 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 TPK1Q9H3S4 243 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 HINT3Q9NQE9 182 aaKnown RBP11.48□□□□□ -0.57
CLK3-213ENST00000563842 CYSLTR2Q9NS75 346 aa11.48□□□□□ -0.57
CLK3-213ENST00000563842 PDP1Q9P0J1 537 aaPredicted RBP11.48□□□□□ -0.57
CLK3-213ENST00000563842 MYEF2Q9P2K5 600 aaKnown RBP11.48□□□□□ -0.57
CLK3-213ENST00000563842 CGGBP1Q9UFW8 167 aaPredicted RBP11.48□□□□□ -0.57
CLK3-213ENST00000563842 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.47□□□□□ -0.572e-12■■□□□ 12.1
CLK3-213ENST00000563842 PLSCR5A0PG75 271 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 C17orf100A8MU93 164 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 VWC2LB2RUY7 222 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 H3BN98 237 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 SOX14O95416 240 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 CLPTM1O96005 669 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 ZNF823P16415 610 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 ZNF3P17036 446 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 NR4A2P43354 598 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 BLVRAP53004 296 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 ERVS71-1P61550 626 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 HIST1H3AP68431 136 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 MRPS11P82912 194 aaKnown RBP11.47□□□□□ -0.57
CLK3-213ENST00000563842 ECH1Q13011 328 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 MAD2L1BPQ15013 274 aaPredicted RBP11.47□□□□□ -0.57
CLK3-213ENST00000563842 CCDC92Q53HC0 331 aaPredicted RBP11.47□□□□□ -0.57
CLK3-213ENST00000563842 FAM209AQ5JX71 171 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 ELFN2Q5R3F8 820 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 HIST2H3PS2Q5TEC6 136 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 HIST2H3AQ71DI3 136 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 Q71RC1 249 aaPredicted RBP11.47□□□□□ -0.57
CLK3-213ENST00000563842 ZNF101Q8IZC7 436 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 MAPK1IP1LQ8NDC0 245 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 PROKR2Q8NFJ6 384 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 OR5L1Q8NGL2 311 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 OR8D4Q8NGM9 314 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 SLC25A40Q8TBP6 338 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 DNAJC9Q8WXX5 260 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 NRBF2Q96F24 287 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 MARS2Q96GW9 593 aaKnown RBP11.47□□□□□ -0.57
CLK3-213ENST00000563842 COQ7Q99807 217 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 NIPSNAP1Q9BPW8 284 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 NKIRAS2Q9NYR9 191 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 GRIP1Q9Y3R0 1128 aa11.47□□□□□ -0.57
CLK3-213ENST00000563842 MALRD1Q5VYJ5 2156 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 RIIAD1A6NNX1 92 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 RER1O15258 196 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 TLX2O43763 284 aaPredicted RBP11.46□□□□□ -0.57
CLK3-213ENST00000563842 CIB2O75838 187 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 IGFBP1P08833 259 aaPredicted RBP11.46□□□□□ -0.57
CLK3-213ENST00000563842 NAT2P11245 290 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 GIFP27352 417 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 FMO3P31513 532 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 GRK5P34947 590 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 MEP1BQ16820 701 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 ZMAT1Q5H9K5 638 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 C1orf146Q5VVC0 180 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 RFPL4BQ6ZWI9 263 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.46□□□□□ -0.57
CLK3-213ENST00000563842 CYB561A3Q8NBI2 242 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 SLC37A3Q8NCC5 494 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 KLF14Q8TD94 323 aaPredicted RBP11.46□□□□□ -0.57
CLK3-213ENST00000563842 RDH5Q92781 318 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 DIRC2Q96SL1 478 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 DDOQ99489 341 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 TEX12Q9BXU0 123 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 OR2J1Q9GZK6 312 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 FN3KQ9H479 309 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 ARMC1Q9NVT9 282 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 LHFPL6Q9Y693 200 aa11.46□□□□□ -0.57
CLK3-213ENST00000563842 A0A096LNT2 108 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 CD5LO43866 347 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 GPANK1O95872 356 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 NGFP01138 241 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 TFP02787 698 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 OSMP13725 252 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 PAICSP22234 425 aaKnown RBP11.45□□□□□ -0.58
CLK3-213ENST00000563842 ACHEP22303 614 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 ZNF81P51508 661 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 SLC25A1P53007 311 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 CRMP1Q14194 572 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 GGTLC2Q14390 218 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 TMEM249Q2WGJ8 235 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 ALKBH6Q3KRA9 238 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 ZNF362Q5T0B9 420 aaPredicted RBP11.45□□□□□ -0.58
CLK3-213ENST00000563842 SPATA46Q5T0L3 261 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 SLC27A4Q6P1M0 643 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 SHQ1Q6PI26 577 aaKnown RBP11.45□□□□□ -0.58
CLK3-213ENST00000563842 TMEM179BQ7Z7N9 219 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 ATG16L2Q8NAA4 619 aa11.45□□□□□ -0.58
CLK3-213ENST00000563842 OR4Q3Q8NH05 313 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms