RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TIMM8AO60220 97 aaPredicted RBP14.34□□□□□ -0.11
CLK3-210ENST00000563112 KRT36O76013 467 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 IGHV1-46P01743 117 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 NOS3P29474 1203 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 SRP14P37108 136 aaKnown RBP14.34□□□□□ -0.11
CLK3-210ENST00000563112 MVKQ03426 396 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 SLC3A1Q07837 685 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 KCNMB1Q16558 191 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 PTCHD4Q6ZW05 846 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 GNPDA2Q8TDQ7 276 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 RAB1CQ92928 201 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 NSL1Q96IY1 281 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 CCT8L2Q96SF2 557 aa14.34□□□□□ -0.11
CLK3-210ENST00000563112 ARPC3O15145 178 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 IDH3BO43837 385 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 MPZL1O95297 269 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 ADH4P08319 380 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 ANPEPP15144 967 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 MTX3Q5HYI7 312 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 C1orf94Q6P1W5 598 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 LEG1Q6P5S2 330 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 ARHGAP24Q8N264 748 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 LINC00471Q8N535 108 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 GJC3Q8NFK1 279 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 OR51F2Q8NH61 342 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 OR1F12Q8NHA8 337 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 SAMD8Q96LT4 415 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 DCLRE1CQ96SD1 692 aaKnown RBP14.33□□□□□ -0.12
CLK3-210ENST00000563112 SRA1Q9HD15 236 aaKnown RBP14.33□□□□□ -0.12
CLK3-210ENST00000563112 ACTR3BQ9P1U1 418 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 ATPIF1Q9UII2 106 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 B9D1Q9UPM9 204 aa14.33□□□□□ -0.12
CLK3-210ENST00000563112 ZSCAN5BA6NJL1 495 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 FAM157AC9JC47 383 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 WNT9BO14905 357 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 GAAP10253 952 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 TNFSF4P23510 183 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 GSSP48637 474 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 RGS6P49758 472 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 LMO4P61968 165 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 TSPAN31Q12999 210 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 PSG7Q13046 419 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 SLC36A3Q495N2 470 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 CCDC92Q53HC0 331 aaPredicted RBP14.32□□□□□ -0.12
CLK3-210ENST00000563112 AVPI1Q5T686 147 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 OTPQ5XKR4 325 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 CYP2R1Q6VVX0 501 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.32□□□□□ -0.12
CLK3-210ENST00000563112 FITM2Q8N6M3 262 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 OR5L1Q8NGL2 311 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 OR4K13Q8NH42 304 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 CCL17Q92583 94 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 PTP4A1Q93096 173 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 TMEM186Q96B77 213 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 RAB39BQ96DA2 213 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 CMBLQ96DG6 245 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 TSSK2Q96PF2 358 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 NMNAT3Q96T66 252 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 MSL2Q9HCI7 577 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 KLHL21Q9UJP4 597 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 STARD10Q9Y365 291 aa14.32□□□□□ -0.12
CLK3-210ENST00000563112 OR6C6A6NF89 314 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 J3QW42 95 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 TNFRSF11BO00300 401 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 MSMBP08118 114 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 HIST1H1CP16403 213 aaKnown RBP14.31□□□□□ -0.12
CLK3-210ENST00000563112 TNFAIP6P98066 277 aaPredicted RBP14.31□□□□□ -0.12
CLK3-210ENST00000563112 RPL13AP3Q6NVV1 102 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 PEG10Q86TG7 708 aaKnown RBP14.31□□□□□ -0.12
CLK3-210ENST00000563112 CCDC197Q8NCU1 140 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 OR52L1Q8NGH7 329 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 SLC7A6Q92536 515 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 CDADC1Q9BWV3 514 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 HDHD2Q9H0R4 259 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 MUC13Q9H3R2 512 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 ZNF665Q9H7R5 613 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 LPAR2Q9HBW0 351 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 RPRD1BQ9NQG5 326 aaKnown RBP14.31□□□□□ -0.12
CLK3-210ENST00000563112 HIF1ANQ9NWT6 349 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 PURGQ9UJV8 347 aaKnown RBP14.31□□□□□ -0.12
CLK3-210ENST00000563112 WIPI2Q9Y4P8 454 aa14.31□□□□□ -0.12
CLK3-210ENST00000563112 IGLV1-36A0A0B4J1U3 117 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 DCTN6O00399 190 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 RER1O15258 196 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 CD55P08174 381 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 KITLGP21583 273 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 CALB2P22676 271 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 HMGA2P52926 109 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 CDK5R2Q13319 367 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 TMEM255AQ5JRV8 349 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 LIPNQ5VXI9 398 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 ACSM5Q6NUN0 579 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 PGBD2Q6P3X8 592 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 ZNF620Q6ZNG0 422 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 RINLQ6ZS11 566 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 DHFR2Q86XF0 187 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 OR6V1Q8N148 313 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 OR2AJ1Q8NGZ0 328 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 POP5Q969H6 163 aaKnown RBP14.3□□□□□ -0.12
CLK3-210ENST00000563112 HAVCR1Q96D42 359 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms