RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 LINC00471Q8N535 108 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 OR52E2Q8NGJ4 325 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 OR4C15Q8NGM1 316 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 TRIM15Q9C019 465 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 C1orf21Q9H246 121 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 POFUT1Q9H488 388 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 DECR2Q9NUI1 292 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 VNN3Q9NY84 501 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 KCNS2Q9ULS6 477 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 U3KQV3 271 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 PLSCR5A0PG75 271 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 OR6C68A6NDL8 312 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 RER1O15258 196 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 PPIHO43447 177 aaKnown RBP13.35□□□□□ -0.27
VPS39-203ENST00000561797 IDH3BO43837 385 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 ICMTO60725 284 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 MMP15P51511 669 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.35□□□□□ -0.27
VPS39-203ENST00000561797 OR2T5Q6IEZ7 315 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 CORO6Q6QEF8 472 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 TRPM8Q7Z2W7 1104 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 OR52L1Q8NGH7 329 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 OR2T29Q8NH02 315 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 OR1F12Q8NHA8 337 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 ASB9Q96DX5 294 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 BEX2Q9BXY8 128 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 REEP1Q9H902 201 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 NKIRAS2Q9NYR9 191 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 STARD10Q9Y365 291 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 SAMHD1Q9Y3Z3 626 aaKnown RBP13.35□□□□□ -0.27
VPS39-203ENST00000561797 LHFPL6Q9Y693 200 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 CDH10Q9Y6N8 788 aa13.35□□□□□ -0.27
VPS39-203ENST00000561797 ZSCAN5BA6NJL1 495 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 TIMM8AO60220 97 aaPredicted RBP13.34□□□□□ -0.27
VPS39-203ENST00000561797 RP2O75695 350 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 UBOX5O94941 541 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 IGHV1-46P01743 117 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 HLA-DQA2P01906 255 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 DBHP09172 617 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 GAAP10253 952 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 IGFBP5P24593 272 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 TMEM33P57088 247 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 MRPS11P82912 194 aaKnown RBP13.34□□□□□ -0.27
VPS39-203ENST00000561797 TEKQ02763 1124 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 PSG7Q13046 419 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 ZNF770Q6IQ21 691 aaPredicted RBP13.34□□□□□ -0.27
VPS39-203ENST00000561797 RPL13AP3Q6NVV1 102 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 PGM2L1Q6PCE3 622 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 IL17RELQ6ZVW7 336 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 USP51Q70EK9 711 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 AQP11Q8NBQ7 271 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 HPS1Q92902 700 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 PLA2G12AQ9BZM1 189 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 SHARPINQ9H0F6 387 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 MSL2Q9HCI7 577 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 TBCCD1Q9NVR7 557 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 TMEM160Q9NX00 188 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 CDC42EP3Q9UKI2 254 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 JMJD1CQ15652 2540 aa13.34□□□□□ -0.27
VPS39-203ENST00000561797 IGHV1-69-2A0A0G2JMI3 117 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 OR6C6A6NF89 314 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 H3BSA7 217 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 ACOT8O14734 319 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 WNT9BO14905 357 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 TFP02787 698 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 RAP2AP10114 183 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 GSTM3P21266 225 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 PYCR1P32322 319 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 CRYBB2P43320 205 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 MICAQ29983 383 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 RASSF6Q6ZTQ3 369 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 LINC00346Q8IVM7 164 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 CYB561A3Q8NBI2 242 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 NPEPL1Q8NDH3 523 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 GJC3Q8NFK1 279 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 SLC26A10Q8NG04 563 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 OR8D4Q8NGM9 314 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 CLDND2Q8NHS1 167 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 CMBLQ96DG6 245 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 CDADC1Q9BWV3 514 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 RACGAP1Q9H0H5 632 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 SAP30LQ9HAJ7 183 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 TBC1D23Q9NUY8 699 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 IL20Q9NYY1 176 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 TREM2Q9NZC2 230 aa13.33□□□□□ -0.28
VPS39-203ENST00000561797 BHLHE40O14503 412 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 GYG2O15488 501 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 SOX14O95416 240 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 CST1P01037 141 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 LIPAP38571 399 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 HIST1H3AP68431 136 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 MVKQ03426 396 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 TRAP1Q12931 704 aaKnown RBP13.32□□□□□ -0.28
VPS39-203ENST00000561797 SLC36A3Q495N2 470 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 AVPI1Q5T686 147 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 HIST2H3PS2Q5TEC6 136 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 HIST2H3AQ71DI3 136 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 ZBTB46Q86UZ6 589 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 LINC01356Q8N9X3 169 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 OR2AJ1Q8NGZ0 328 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms