RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ATG16L2Q8NAA4 619 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 CYB561A3Q8NBI2 242 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 SLC26A10Q8NG04 563 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 OR1J2Q8NGS2 313 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 TEX47Q8TBZ9 253 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 POM121L2Q96KW2 1035 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 APOL4Q9BPW4 351 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 NMNAT2Q9BZQ4 307 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 PLK3Q9H4B4 646 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 CDH20Q9HBT6 801 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 SRA1Q9HD15 236 aaKnown RBP8.07□□□□□ -1.12
LDLR-211ENST00000560173 CMC2Q9NRP2 79 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 ASH2LQ9UBL3 628 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 KLHL21Q9UJP4 597 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 SPEF1Q9Y4P9 236 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 CSPG4Q6UVK1 2322 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 A0A087WXM4 84 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 RIIAD1A6NNX1 92 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 FAM171A2A8MVW0 826 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 B9A039 149 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 SLC16A6O15403 523 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 SGCEO43556 437 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 DOK2O60496 412 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 NDUFS7O75251 213 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 CLPTM1O96005 669 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 IFNGP01579 166 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 TFP02787 698 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 POU1F1P28069 291 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 PCSK6P29122 969 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 PYCR1P32322 319 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 GRK5P34947 590 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 WNT5AP41221 380 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 CENPAP49450 140 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 GDI2P50395 445 aaKnown RBP8.06□□□□□ -1.12
LDLR-211ENST00000560173 SLC25A1P53007 311 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 SNRPD2P62316 118 aaKnown RBP8.06□□□□□ -1.12
LDLR-211ENST00000560173 CSNK2BP67870 215 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 GLO1Q04760 184 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 GINS1Q14691 196 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 MEP1BQ16820 701 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 KDM4DQ6B0I6 523 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 SLC27A4Q6P1M0 643 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 USP51Q70EK9 711 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 VASH1Q7L8A9 365 aaPredicted RBP8.06□□□□□ -1.12
LDLR-211ENST00000560173 THAP5Q7Z6K1 395 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.06□□□□□ -1.12
LDLR-211ENST00000560173 ALDH16A1Q8IZ83 802 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 PARP8Q8N3A8 854 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 OR2T4Q8NH00 348 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 ZNRF4Q8WWF5 429 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 MRPL24Q96A35 216 aaKnown RBP8.06□□□□□ -1.12
LDLR-211ENST00000560173 TRMT61AQ96FX7 289 aaKnown RBP8.06□□□□□ -1.12
LDLR-211ENST00000560173 TMUB1Q9BVT8 246 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 VCX3AQ9NNX9 186 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 KRT84Q9NSB2 600 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 FAM118AQ9NWS6 357 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 GDF2Q9UK05 429 aaPredicted RBP8.06□□□□□ -1.12
LDLR-211ENST00000560173 POLR1DQ9Y2S0 133 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 CMAHPQ9Y471 501 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 LHFPL6Q9Y693 200 aa8.06□□□□□ -1.12
LDLR-211ENST00000560173 LOC100130705A0A1B0GUX0 176 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 TMEM129A0AVI4 362 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 C5orf49A4QMS7 147 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 OR6C6A6NF89 314 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 VSTM5A8MXK1 200 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 DLGAP1O14490 977 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 RER1O15258 196 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 SYNGR3O43761 229 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 ICMTO60725 284 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 FAM157BP0CG42 384 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 COX5BP10606 129 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 BMP4P12644 408 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 CD99P14209 185 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 ZNF3P17036 446 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 SPI1P17947 270 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 CCNOP22674 350 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 GGT2P36268 569 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 RPL5P46777 297 aaKnown RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 HTR5AP47898 357 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 EVX1P49640 407 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 DAPP51397 102 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 UCP2P55851 309 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 HIST1H3AP68431 136 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 TEKQ02763 1124 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 RAB35Q15286 201 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 CCDC92Q53HC0 331 aaPredicted RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 RBM48Q5RL73 367 aaKnown RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 HIST2H3PS2Q5TEC6 136 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 ACSM5Q6NUN0 579 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 RFPL4BQ6ZWI9 263 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 HIST2H3AQ71DI3 136 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 ZNF101Q8IZC7 436 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 PROKR2Q8NFJ6 384 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 OR10H5Q8NGA6 315 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 OR9Q1Q8NGQ5 310 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 Q96MF0 132 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 DOK1Q99704 481 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 MRPL37Q9BZE1 423 aaKnown RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 OR51B6Q9H340 312 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 TOR3AQ9H497 397 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms