RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 RPS19BP1Q86WX3 136 aaKnown RBP9.45□□□□□ -0.9
CUX1-217ENST00000558836 PLCZ1Q86YW0 608 aa9.45□□□□□ -0.9
CUX1-217ENST00000558836 TCTE3Q8IZS6 198 aa9.45□□□□□ -0.9
CUX1-217ENST00000558836 ASCC1Q8N9N2 400 aaKnown RBP9.45□□□□□ -0.9
CUX1-217ENST00000558836 OR2Y1Q8NGV0 311 aa9.45□□□□□ -0.9
CUX1-217ENST00000558836 PROK2Q9HC23 129 aa9.45□□□□□ -0.9
CUX1-217ENST00000558836 HHLA2Q9UM44 414 aa9.45□□□□□ -0.9
CUX1-217ENST00000558836 TMEM272A0A1B0GTI8 110 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 CTDSPLO15194 276 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 GLSO94925 669 aaPredicted RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 LDOC1O95751 146 aaPredicted RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 QDPRP09417 244 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 RAB40ALP0C0E4 278 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 PGA4P0DJD7 388 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 PGA3P0DJD8 388 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 TCN2P20062 427 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 ANXA7P20073 488 aaKnown RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 CLDN17P56750 224 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 MC2RQ01718 297 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 PCGF3Q3KNV8 242 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 LINC00303Q3SY05 128 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 SLC22A10Q63ZE4 541 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 SLC25A25Q6KCM7 469 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 SLC23A3Q6PIS1 610 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 Q6ZTK2 550 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 ZNF627Q7L945 461 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 BPHLQ86WA6 291 aaPredicted RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 COMMD2Q86X83 199 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 ZNF454Q8N9F8 522 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 GRPEL2Q8TAA5 225 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 RAB40AQ8WXH6 277 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 FAM46BQ96A09 425 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 SEC22CQ9BRL7 303 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 CKLFQ9UBR5 152 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 ZMAT5Q9UDW3 170 aaKnown RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 CYB5R1Q9UHQ9 305 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 LHFPL6Q9Y693 200 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 DNAJC13O75165 2243 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 LOC102723996A0A087X1L8 192 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 GGT3PA6NGU5 568 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 FAM47E-STBD1D6RA91 191 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 STK17BO94768 372 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 ACSM4P0C7M7 580 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 STOMP27105 288 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 LAP3P28838 519 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 DUSP3P51452 185 aaPredicted RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 SSR4P51571 173 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 BAIAP2L2Q6UXY1 529 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 TIPARPQ7Z3E1 657 aaKnown RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 ZC3H10Q96K80 434 aaKnown RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 IER2Q9BTL4 223 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 NXT1Q9UKK6 140 aaKnown RBP9.44□□□□□ -0.9
CUX1-217ENST00000558836 DCHS1Q96JQ0 3298 aa9.44□□□□□ -0.9
CUX1-217ENST00000558836 ETV2O00321 342 aaPredicted RBP9.43□□□□□ -0.9
CUX1-217ENST00000558836 YKT6O15498 198 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 XRCC3O43542 346 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 WDPCPO95876 746 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 IGHG1P01857 330 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 PSMB1P20618 241 aaKnown RBP9.43□□□□□ -0.9
CUX1-217ENST00000558836 HTR2CP28335 458 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 FOLR3P41439 243 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 RAD52P43351 418 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 DYRK1AQ13627 763 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 MOGAT2Q3SYC2 334 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 SLC25A53Q5H9E4 307 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 PEAR1Q5VY43 1037 aaPredicted RBP9.43□□□□□ -0.9
CUX1-217ENST00000558836 LAMTOR1Q6IAA8 161 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 BTN2A1Q7KYR7 527 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 FADS6Q8N9I5 356 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 RNF133Q8WVZ7 376 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 CYYR1Q96J86 154 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 CMTM3Q96MX0 182 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 ZNF385AQ96PM9 386 aaKnown RBP9.43□□□□□ -0.9
CUX1-217ENST00000558836 B3GNT4Q9C0J1 378 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 HPF1Q9NWY4 346 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 PISDQ9UG56 409 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 GDF2Q9UK05 429 aaPredicted RBP9.43□□□□□ -0.9
CUX1-217ENST00000558836 PCDHGA5Q9Y5G8 931 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 MED13Q9UHV7 2174 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 DOCK7Q96N67 2140 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 IGLV3-32A0A0A0MS00 114 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 FAM172BPA6NC97 362 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 ZNF726A6NNF4 738 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 ACOT7O00154 380 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 SLC17A2O00624 439 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 TTRP02766 147 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 MAP2K6P52564 334 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 Q0VFX4 171 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 SGCAQ16586 387 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 PHYHD1Q5SRE7 291 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 HACD4Q5VWC8 232 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 ANKRD16Q6P6B7 361 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 OPN5Q6U736 354 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 YRDCQ86U90 279 aaKnown RBP9.43□□□□□ -0.9
CUX1-217ENST00000558836 NAA40Q86UY6 237 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 LRRC18Q8N456 261 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 NOXO1Q8NFA2 376 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 OR11H4Q8NGC9 324 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 OR4D6Q8NGJ1 314 aa9.43□□□□□ -0.9
CUX1-217ENST00000558836 OR51E1Q8TCB6 317 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms