RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TANGO2Q6ICL3 276 aa10.22□□□□□ -0.77
LDLR-208ENST00000558518 OR51F2Q8NH61 342 aa10.22□□□□□ -0.77
LDLR-208ENST00000558518 HHIPL1Q96JK4 782 aa10.22□□□□□ -0.77
LDLR-208ENST00000558518 DCBLD2Q96PD2 775 aa10.22□□□□□ -0.77
LDLR-208ENST00000558518 TSPAN32Q96QS1 320 aa10.22□□□□□ -0.77
LDLR-208ENST00000558518 NUDT22Q9BRQ3 303 aa10.22□□□□□ -0.77
LDLR-208ENST00000558518 TEX101Q9BY14 249 aa10.22□□□□□ -0.77
LDLR-208ENST00000558518 EIF5A2Q9GZV4 153 aaKnown RBP10.22□□□□□ -0.77
LDLR-208ENST00000558518 FAM86C1Q9NVL1 165 aa10.22□□□□□ -0.77
LDLR-208ENST00000558518 A0A087WUJ7 227 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 LOC101059948A0A1B0GTJ6 334 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 A0A1W2PPC1 479 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 MSGN1A6NI15 193 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 SCDO00767 359 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 OR2F2O95006 317 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 HOXA1P49639 335 aaPredicted RBP10.21□□□□□ -0.77
LDLR-208ENST00000558518 HTRA3P83110 453 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 OR2F1Q13607 317 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 TMEM225Q6GV28 225 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 SHISA6Q6ZSJ9 500 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 MOB3CQ70IA8 216 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 BAP18Q8IXM2 172 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 OR2I1PQ8NGU4 316 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 ZNF285Q96NJ3 590 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 CLCC1Q96S66 551 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 FAM60AQ9NP50 221 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 ZFP57Q9NU63 452 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 ZMAT5Q9UDW3 170 aaKnown RBP10.21□□□□□ -0.77
LDLR-208ENST00000558518 C1orf196B1AJZ1 125 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 B4DGG1 531 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 LY86O95711 162 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 PRH1P02810 166 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 ARG1P05089 322 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 RIDAP52758 137 aaKnown RBP10.21□□□□□ -0.77
LDLR-208ENST00000558518 RPS21P63220 83 aaKnown RBP10.21□□□□□ -0.77
LDLR-208ENST00000558518 FMODQ06828 376 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 NPSR1Q6W5P4 371 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 ZNF321PQ8N8H1 164 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 ZNF764Q96H86 408 aaPredicted RBP10.21□□□□□ -0.77
LDLR-208ENST00000558518 C4orf45Q96LM5 186 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 SULT4A1Q9BR01 284 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 TCEAL2Q9H3H9 227 aaPredicted RBP10.21□□□□□ -0.77
LDLR-208ENST00000558518 SEC61A2Q9H9S3 476 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 RHOFQ9HBH0 211 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 ICAM5Q9UMF0 924 aa10.21□□□□□ -0.77
LDLR-208ENST00000558518 hCG_1809904A0A1W2PP81 198 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 A0A1W2PR64 198 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 A0A1W2PRV1 198 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 METTL21EPA6NDL7 271 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 PSMB6P28072 239 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 GJA4P35212 333 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 PNLIPRP2P54317 469 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 C9orf152Q5JTZ5 239 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 BCORP1Q8N888 145 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 OR4D6Q8NGJ1 314 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 OR13C8Q8NGS7 320 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 SLC22A18Q96BI1 424 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 PRTFDC1Q9NRG1 225 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 UQCC1Q9NVA1 299 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 COA3Q9Y2R0 106 aaPredicted RBP10.21□□□□□ -0.78
LDLR-208ENST00000558518 LSM5Q9Y4Y9 91 aaKnown RBP10.21□□□□□ -0.78
LDLR-208ENST00000558518 TICRRQ7Z2Z1 1910 aa10.21□□□□□ -0.78
LDLR-208ENST00000558518 SULT2B1O00204 365 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 SLC17A2O00624 439 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 NME2P1O60361 137 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 CXCL10P02778 98 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 SFTA3P0C7M3 94 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 MUC1P15941 1255 aaPredicted RBP10.2□□□□□ -0.78
LDLR-208ENST00000558518 ZNF823P16415 610 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 ALOX5APP20292 161 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 CD1CP29017 333 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 RFC3P40938 356 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 TM4SF4P48230 202 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 FABP9Q0Z7S8 132 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 NCMAPQ5T1S8 102 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 CA13Q8N1Q1 262 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 FAM160A2Q8N612 972 aaPredicted RBP10.2□□□□□ -0.78
LDLR-208ENST00000558518 OR5AP2Q8NGF4 316 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 SECTM1Q8WVN6 248 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 RSC1A1Q92681 617 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 TCEAL3Q969E4 200 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 TAAR8Q969N4 342 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 RAB7BQ96AH8 199 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 MYO7BQ6PIF6 2116 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 CCDC163A0A0D9SF12 145 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 TMEM269A0A1B0GVZ9 245 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 C9orf170A2RU37 121 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 H0YIG0 161 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 ZNF749O43361 778 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 CELA2BP08218 269 aaPredicted RBP10.2□□□□□ -0.78
LDLR-208ENST00000558518 RASGEF1BQ0VAM2 473 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 AWAT2Q6E213 333 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 RNF141Q8WVD5 230 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 TIMM29Q9BSF4 260 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 EMC6Q9BV81 110 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 KIR3DX1Q9H7L2 352 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 MED9Q9NWA0 146 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 A6NLC8 198 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 TNFSF12O43508 249 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms