RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 NDRG4Q9ULP0 352 aaKnown RBP12.37□□□□□ -0.43
USP3-205ENST00000557884 OR6C6A6NF89 314 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 SMPD2O60906 423 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 SNAP29O95721 258 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 LCKP06239 509 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 PEX2P28328 305 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 SERPINF1P36955 418 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 NAA10P41227 235 aaPredicted RBP12.36□□□□□ -0.43
USP3-205ENST00000557884 ART1P52961 327 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 ERVS71-1P61550 626 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 HIST1H3AP68431 136 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 ELFN2Q5R3F8 820 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 HIST2H3PS2Q5TEC6 136 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 LPCAT4Q643R3 524 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 HIST2H3AQ71DI3 136 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 SPATC1Q76KD6 591 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 DTX2Q86UW9 622 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 GALNT4Q8N4A0 578 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 OR6N2Q8NGY6 317 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 TMEM163Q8TC26 289 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 IGFBPL1Q8WX77 278 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 PERPQ96FX8 193 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 MAP6Q96JE9 813 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 INTS14Q96SY0 518 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 CXorf56Q9H5V9 222 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 ZNF442Q9H7R0 627 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 CBLN4Q9NTU7 201 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 KCNG2Q9UJ96 466 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 CMAHPQ9Y471 501 aa12.36□□□□□ -0.43
USP3-205ENST00000557884 CCDC182A6NF36 153 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 PRODHO43272 600 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 SELENOFO60613 162 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 ABHD16AO95870 558 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 MRPL3P09001 348 aaKnown RBP12.35□□□□□ -0.43
USP3-205ENST00000557884 COX5BP10606 129 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 SLC2A5P22732 501 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 GLRXP35754 106 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 BLVRAP53004 296 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 UCP2P55851 309 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 RPS23P62266 143 aaKnown RBP12.35□□□□□ -0.43
USP3-205ENST00000557884 SPATA46Q5T0L3 261 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 C11orf71Q6IPW1 123 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 RFPL4BQ6ZWI9 263 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 ZNF771Q7L3S4 317 aaPredicted RBP12.35□□□□□ -0.43
USP3-205ENST00000557884 DPY19L4Q7Z388 723 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 DCXRQ7Z4W1 244 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 LRP11Q86VZ4 500 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 ZNF101Q8IZC7 436 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 ABHD4Q8TB40 342 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 FAM81AQ8TBF8 368 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 MBD6Q96DN6 1003 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 COQ7Q99807 217 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 SYT3Q9BQG1 590 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 CACNG6Q9BXT2 260 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 HDHD2Q9H0R4 259 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 BEX4Q9NWD9 120 aaPredicted RBP12.35□□□□□ -0.43
USP3-205ENST00000557884 EIF3KQ9UBQ5 218 aaKnown RBP12.35□□□□□ -0.43
USP3-205ENST00000557884 GRIP1Q9Y3R0 1128 aa12.35□□□□□ -0.43
USP3-205ENST00000557884 PLCE1Q9P212 2302 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 VSTM5A8MXK1 200 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 TMCC2O75069 709 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 PCSK6P29122 969 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 RAD52P43351 418 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 CDC42P60953 191 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 EFNB1P98172 346 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 EIF2B1Q14232 305 aaKnown RBP12.34□□□□□ -0.43
USP3-205ENST00000557884 MST1LQ2TV78 715 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 SLC35D3Q5M8T2 416 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 RGS7BPQ6MZT1 257 aaPredicted RBP12.34□□□□□ -0.43
USP3-205ENST00000557884 TIGD4Q8IY51 512 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 OR10S1Q8NGN2 331 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 OR1J1Q8NGS3 322 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 UBE2FQ969M7 185 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 C4orf45Q96LM5 186 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 ATF6BQ99941 703 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 MRPL37Q9BZE1 423 aaKnown RBP12.34□□□□□ -0.43
USP3-205ENST00000557884 BCL2L14Q9BZR8 327 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 PLK3Q9H4B4 646 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 MARCH7Q9H992 704 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 PNRC2Q9NPJ4 139 aaKnown RBP12.34□□□□□ -0.43
USP3-205ENST00000557884 CENPMQ9NSP4 180 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 IMPAD1Q9NX62 359 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 DNAJC27Q9NZQ0 273 aa12.34□□□□□ -0.43
USP3-205ENST00000557884 NKX1-2Q9UD57 310 aaPredicted RBP12.34□□□□□ -0.43
USP3-205ENST00000557884 MYO9AB2RTY4 2548 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 B9A039 149 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 F5H5K5 113 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 H0YHG0 523 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 OVOL3O00110 214 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 NGFP01138 241 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 PTH2RP49190 550 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 SNRPD2P62316 118 aaKnown RBP12.33□□□□□ -0.44
USP3-205ENST00000557884 PCK2Q16822 640 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 SWI5Q1ZZU3 235 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 TEX30Q5JUR7 227 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 LCN1P1Q5VSP4 162 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 AADACL4Q5VUY2 407 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 MEPCEQ7L2J0 689 aaKnown RBP12.33□□□□□ -0.44
USP3-205ENST00000557884 SLC25A40Q8TBP6 338 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 MRPL24Q96A35 216 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms