RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 MRPL24Q96A35 216 aaKnown RBP11.71□□□□□ -0.53
SHMT2-228ENST00000557302 HCAR1Q9BXC0 346 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 OR51V1Q9H2C8 321 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 CYB5R1Q9UHQ9 305 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 ATPIF1Q9UII2 106 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 ORC6Q9Y5N6 252 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 COMMD3-BMI1R4GMX3 469 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 PMF1-BGLAPU3KQ54 211 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 RTTNQ86VV8 2226 aa11.71□□□□□ -0.54
SHMT2-228ENST00000557302 ZAR1LA6NP61 321 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 ANKRD65E5RJM6 399 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 H7C417 338 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 EI24O14681 340 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 GLCEO94923 617 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 BAG2O95816 211 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 EPHA2P29317 976 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 WNT5AP41221 380 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 MST1LQ2TV78 715 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 KLHL12Q53G59 568 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 Q5PR19 223 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 ELFN2Q5R3F8 820 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 SLX4IPQ5VYV7 408 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 ARL9Q6T311 187 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 SPNS3Q6ZMD2 512 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 CXXC5Q7LFL8 322 aaKnown RBP11.7□□□□□ -0.54
SHMT2-228ENST00000557302 CPOQ8IVL8 374 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 ZNF511Q8NB15 262 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 PITX2Q99697 317 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 GABARAPL3Q9BY60 117 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 HDHD2Q9H0R4 259 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 RIBC2Q9H4K1 309 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 WDR76Q9H967 626 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 HINT3Q9NQE9 182 aaKnown RBP11.7□□□□□ -0.54
SHMT2-228ENST00000557302 USE1Q9NZ43 259 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 GDF2Q9UK05 429 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-228ENST00000557302 FBXO9Q9UK97 447 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-228ENST00000557302 ITPR3Q14573 2671 aa11.7□□□□□ -0.54
SHMT2-228ENST00000557302 PRODHO43272 600 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ICMTO60725 284 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ABHD16AO95870 558 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ALPLP05186 524 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 SPARCP09486 303 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 GSTT1P30711 240 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ENTPD1P49961 510 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ALDH3A2P51648 485 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 SELENOVP59797 346 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ECH1Q13011 328 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 MSMPQ1L6U9 139 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 LINC01590Q5TEZ4 76 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 SHEQ5VZ18 495 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 TMEM154Q6P9G4 183 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 CFAP77Q6ZQR2 320 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 C1orf174Q8IYL3 243 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ZNF101Q8IZC7 436 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 CBR4Q8N4T8 237 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 OR1J1Q8NGS3 322 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ABHD4Q8TB40 342 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 SLC7A6Q92536 515 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 C4orf45Q96LM5 186 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 COQ7Q99807 217 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 C9orf16Q9BUW7 83 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 MRPL37Q9BZE1 423 aaKnown RBP11.69□□□□□ -0.54
SHMT2-228ENST00000557302 ELOVL3Q9HB03 270 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 BARX1Q9HBU1 254 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-228ENST00000557302 FZR1Q9UM11 496 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 GRIP1Q9Y3R0 1128 aa11.69□□□□□ -0.54
SHMT2-228ENST00000557302 TMEM129A0AVI4 362 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 ERICH4A6NGS2 130 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 ZNF593O00488 134 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-228ENST00000557302 PRKYO43930 277 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 IGHV4-39P01824 125 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 RPS27P42677 84 aaKnown RBP11.68□□□□□ -0.54
SHMT2-228ENST00000557302 EVX1P49640 407 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 RAD23AP54725 363 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 KLF3P57682 345 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-228ENST00000557302 ERVS71-1P61550 626 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 RPS7P62081 194 aaKnown RBP11.68□□□□□ -0.54
SHMT2-228ENST00000557302 PCK2Q16822 640 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 TEX30Q5JUR7 227 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 SLC35D3Q5M8T2 416 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 C12orf73Q69YU5 71 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 PRSS57Q6UWY2 283 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 RFPL4BQ6ZWI9 263 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 KRTAP1-3Q8IUG1 177 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 ERI1Q8IV48 349 aaKnown RBP11.68□□□□□ -0.54
SHMT2-228ENST00000557302 BBS1Q8NFJ9 593 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 SYNPRQ8TBG9 265 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 IPCEF1Q8WWN9 437 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-228ENST00000557302 EME1Q96AY2 570 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 ZMYND19Q96E35 227 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-228ENST00000557302 MAP6Q96JE9 813 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 DCLRE1CQ96SD1 692 aaKnown RBP11.68□□□□□ -0.54
SHMT2-228ENST00000557302 INTS14Q96SY0 518 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 DOK1Q99704 481 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 ATF6BQ99941 703 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 SYT3Q9BQG1 590 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 MARCH7Q9H992 704 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 DYNLRB1Q9NP97 96 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 TBCCD1Q9NVR7 557 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 DUSP13Q9UII6 198 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms