RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 MRPS24Q96EL2 167 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 VN1R3Q9BXE9 311 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 CHST6Q9GZX3 395 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SFXN1Q9H9B4 322 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ALKBH4Q9NXW9 302 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 AK3Q9UIJ7 227 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SERTAD3Q9UJW9 196 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 C19orf53Q9UNZ5 99 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 GAB2Q9UQC2 676 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 IGLV3-16A0A075B6K0 115 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 FAM74A7A6NL05 159 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 BET1O15155 118 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 LY86O95711 162 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 CD53P19397 219 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 PSMB6P28072 239 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 BLVRBP30043 206 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 RABIFP47224 123 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 FASLGP48023 281 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 RAB4BP61018 213 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 RPL27P61353 136 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 RPS18P62269 152 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 FAM74A3Q4VXF1 159 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 RPUSD3Q6P087 351 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SSX9Q7RTT3 188 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SKA3Q8IX90 412 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 FAM185AQ8N0U4 392 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SYS1Q8N2H4 156 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 OR14A16Q8NHC5 309 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 KTI12Q96EK9 354 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 BORCS8Q96FH0 119 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 KLHDC7BQ96G42 594 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SGCZQ96LD1 299 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 FAM103A1Q9BTL3 118 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 TMPRSS13Q9BYE2 586 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 PBX4Q9BYU1 374 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 GPR173Q9NS66 373 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ST6GALNAC2Q9UJ37 374 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 WIF1Q9Y5W5 379 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 WNT11O96014 354 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 TIMP1P01033 207 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 NID1P14543 1247 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 RPA2P15927 270 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ZNF43P17038 809 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 MSX1P28360 303 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 IDH3GP51553 393 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 F2RL1P55085 397 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 MRPS34P82930 218 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 PLGLB1Q02325 96 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 CNN3Q15417 329 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 TCTN1Q2MV58 587 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 MANEAQ5SRI9 462 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ZNF770Q6IQ21 691 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ADAM5Q6NVV9 412 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 NAXDQ8IW45 347 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SEMA6DQ8NFY4 1073 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 CCL4L1Q8NHW4 92 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ZNF296Q8WUU4 475 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 FAM3CQ92520 227 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 DAZLQ92904 295 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 INTS12Q96CB8 462 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 NRSN2Q9GZP1 204 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 METTL9Q9H1A3 318 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 TBC1D29Q9UFV1 150 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 PCDHGA5Q9Y5G8 931 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SLC22A7Q9Y694 548 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ZNF816-ZNF321PA0A0X1KG74 233 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 TRIM77I1YAP6 450 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 LILRB5O75023 590 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 AKR7A3O95154 331 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 LCATP04180 440 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SLC35E2P0CK97 266 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ABOP16442 354 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 CST5P28325 142 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 RPL12P30050 165 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 EFNB2P52799 333 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ZP1P60852 638 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 PPP2CBP62714 309 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 PPP2CAP67775 309 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SLC17A1Q14916 467 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 MIDNQ504T8 468 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 TMEM215Q68D42 235 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 FAM109BQ6ICB4 259 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 OPN5Q6U736 354 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 KIRREL2Q6UWL6 708 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 NPSR1Q6W5P4 371 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 IL34Q6ZMJ4 242 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 UBE3DQ7Z6J8 389 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 STPG2Q8N412 459 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 GVQW1Q8N7I0 195 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ZNF321PQ8N8H1 164 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 TAAR8Q969N4 342 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 ALG14Q96F25 216 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SYT3Q9BQG1 590 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SLC25A21Q9BQT8 299 aaPredicted RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 PBOV1Q9GZY1 135 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 LYRM4Q9HD34 91 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 DNAJB12Q9NXW2 375 aaKnown RBP4.52□□□□□ -1.69
SYNE2-223ENST00000557005 SAGE1Q9NXZ1 904 aa4.52□□□□□ -1.69
SYNE2-223ENST00000557005 FLRT3Q9NZU0 649 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms