RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	SNX33	Q8WV41	574 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	IPCEF1	Q8WWN9	437 aa	Predicted RBP	10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	SPTSSA	Q969W0	71 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	TMEM80	Q96HE8	168 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	MAP6	Q96JE9	813 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	MRO	Q9BYG7	248 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	CDH20	Q9HBT6	801 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	NOX3	Q9HBY0	568 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	MRPS18A	Q9NVS2	196 aa	Known RBP	10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	CRIM1	Q9NZV1	1036 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	PSORS1C1	Q9UIG5	152 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	ATPIF1	Q9UII2	106 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	IKZF2	Q9UKS7	526 aa		10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	EXOG	Q9Y2C4	368 aa	Known RBP	10.9	□□□□□ -0.66
ABCD4-223	ENST00000555904	MYO7B	Q6PIF6	2116 aa		10.9	□□□□□ -0.67
ABCD4-223	ENST00000555904		A0A1W2PQL4	384 aa	Predicted RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	CRYAA	P02489	173 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	APOC1	P02654	83 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	KRT8	P05787	483 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	THBD	P07204	575 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	EPX	P11678	715 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	ZNF14	P17017	642 aa	Predicted RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	ALOX5AP	P20292	161 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	CCNO	P22674	350 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	CRHBP	P24387	322 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	PTAFR	P25105	342 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	HCCS	P53701	268 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	NR1H2	P55055	460 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	GRB2	P62993	217 aa	Known RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	HIST1H3A	P68431	136 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	GALK2	Q01415	458 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	EGR3	Q06889	387 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	ST3GAL4	Q11206	333 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	HIST2H3PS2	Q5TEC6	136 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	UNQ6126/PRO20091	Q6UXV3	157 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	HIST2H3A	Q71DI3	136 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	SPATC1	Q76KD6	591 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	DMRTC2	Q8IXT2	367 aa	Predicted RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	ST7L	Q8TDW4	575 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	SMAP2	Q8WU79	429 aa	Predicted RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	COQ7	Q99807	217 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	SPOCK3	Q9BQ16	436 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	YTHDF1	Q9BYJ9	559 aa	Known RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	WNT5B	Q9H1J7	359 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	FGF20	Q9NP95	211 aa	Predicted RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	DDX28	Q9NUL7	540 aa	Known RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	UBAP1	Q9NZ09	502 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	CRNN	Q9UBG3	495 aa	Predicted RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	DIMT1	Q9UNQ2	313 aa	Known RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	MYRF	Q9Y2G1	1151 aa		10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	EXOSC1	Q9Y3B2	195 aa	Known RBP	10.89	□□□□□ -0.67
ABCD4-223	ENST00000555904	HIVEP3	Q5T1R4	2406 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	IGHV1-18	A0A0C4DH31	117 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	C5orf49	A4QMS7	147 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	C19orf84	I3L1E1	186 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	RGS10	O43665	173 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	SYNGR3	O43761	229 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	ZNF254	O75437	659 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	IGLV1-44	P01699	117 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	IGHA1	P01876	353 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	CECR9	P0C854	216 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	PSKH1	P11801	424 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	COX6B1	P14854	86 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	IGFBP2	P18065	325 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	CRYGS	P22914	178 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	APEX1	P27695	318 aa	Known RBP	10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	SLC6A9	P48067	706 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	CCDC92	Q53HC0	331 aa	Predicted RBP	10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	BEX5	Q5H9J7	111 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	LAIR2	Q6ISS4	152 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	DEGS2	Q6QHC5	323 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	LRRN1	Q6UXK5	716 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	TMPRSS11A	Q6ZMR5	421 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	PLEKHG7	Q6ZR37	379 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	RNF133	Q8WVZ7	376 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	GGH	Q92820	318 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	MS4A3	Q96HJ5	214 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	ALG8	Q9BVK2	526 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	JAM3	Q9BX67	310 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	TTTY10	Q9BZA0	68 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	CCDC90B	Q9GZT6	254 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	NIPAL2	Q9H841	368 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	NPAP1	Q9NZP6	1156 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	EIF3K	Q9UBQ5	218 aa	Known RBP	10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	KLHDC2	Q9Y2U9	406 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	SPEF1	Q9Y4P9	236 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904	PCDHGB5	Q9Y5G0	923 aa		10.88	□□□□□ -0.67
ABCD4-223	ENST00000555904		F5H5K5	113 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904		J3QRE1	110 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	MYL12B	O14950	172 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	TNFAIP8	O95379	198 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	CLDN1	O95832	211 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	CDK1	P06493	297 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	CELA3B	P08861	270 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	TACSTD2	P09758	323 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	CD40	P25942	277 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	OPRL1	P41146	370 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	CHN2	P52757	468 aa		10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	RIDA	P52758	137 aa	Known RBP	10.87	□□□□□ -0.67
ABCD4-223	ENST00000555904	TPTE	P56180	551 aa		10.87	□□□□□ -0.67

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