RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 DAOP14920 347 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 SELENOVP59797 346 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 HIST1H3AP68431 136 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 TEKQ02763 1124 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 COX10Q12887 443 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 HIST2H3PS2Q5TEC6 136 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 C1orf146Q5VVC0 180 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 SLC18B1Q6NT16 456 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 LYPD4Q6UWN0 246 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 UNQ6126/PRO20091Q6UXV3 157 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 CFAP77Q6ZQR2 320 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 HIST2H3AQ71DI3 136 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 LINC00346Q8IVM7 164 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 PROKR2Q8NFJ6 384 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 OR2T4Q8NH00 348 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 KLF14Q8TD94 323 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-219ENST00000555563 IPCEF1Q8WWN9 437 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-219ENST00000555563 GTF3AQ92664 365 aaKnown RBP11.74□□□□□ -0.53
SHMT2-219ENST00000555563 PIMREGQ9BSJ6 248 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 RBM4Q9BWF3 364 aaKnown RBP11.74□□□□□ -0.53
SHMT2-219ENST00000555563 OR2J1Q9GZK6 312 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 MMADHCQ9H3L0 296 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-219ENST00000555563 MS4A5Q9H3V2 200 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 MRPL22Q9NWU5 206 aaKnown RBP11.74□□□□□ -0.53
SHMT2-219ENST00000555563 ATPIF1Q9UII2 106 aa11.74□□□□□ -0.53
SHMT2-219ENST00000555563 CHD3Q12873 2000 aaKnown RBP11.74□□□□□ -0.53
SHMT2-219ENST00000555563 MAP1AP78559 2803 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-219ENST00000555563 LOC390937A0A1W2PQ73 354 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 RIIAD1A6NNX1 92 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 NDUFS8O00217 210 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 NCR1O76036 304 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 IGHV3-13P01766 116 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 HLA-DQA2P01906 255 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 DBHP09172 617 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 PRKACGP22612 351 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 GGT2P36268 569 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 NR4A2P43354 598 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 ARHGDIAP52565 204 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 LOXL1Q08397 574 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-219ENST00000555563 CCNIQ14094 377 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 ZNF718Q3SXZ3 478 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 MBNL2Q5VZF2 373 aaKnown RBP11.73□□□□□ -0.53
SHMT2-219ENST00000555563 ARL9Q6T311 187 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 GJC3Q8NFK1 279 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 OR51L1Q8NGJ5 315 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 UBASH3BQ8TF42 649 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 SNX33Q8WV41 574 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 ZNRF4Q8WWF5 429 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 NMNAT2Q9BZQ4 307 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 BPESC1Q9GZL8 116 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 HDHD2Q9H0R4 259 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 POFUT1Q9H488 388 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 ELOVL3Q9HB03 270 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 NTN4Q9HB63 628 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 HINT3Q9NQE9 182 aaKnown RBP11.73□□□□□ -0.53
SHMT2-219ENST00000555563 SLCO1C1Q9NYB5 712 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 GPR160Q9UJ42 338 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 KLHL21Q9UJP4 597 aa11.73□□□□□ -0.53
SHMT2-219ENST00000555563 TVP23AA6NH52 213 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 C17orf100A8MU93 164 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 LYNX1G3V0Z9 82 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 H3BSA7 217 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 DEAF1O75398 565 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-219ENST00000555563 IFNGP01579 166 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 HPXP02790 462 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 GYPBP06028 91 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 LYNX1P0DP58 116 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 CLUP10909 449 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 PSKH1P11801 424 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 ZNF3P17036 446 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 SPI1P17947 270 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 USF1P22415 310 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-219ENST00000555563 POU1F1P28069 291 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 GCH1P30793 250 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 GRK5P34947 590 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 SLC25A1P53007 311 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 GGTLC2Q14390 218 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 TMEM249Q2WGJ8 235 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 ELFN2Q5R3F8 820 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 SHQ1Q6PI26 577 aaKnown RBP11.72□□□□□ -0.53
SHMT2-219ENST00000555563 ASRGL1Q7L266 308 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 C1orf174Q8IYL3 243 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 ZNF786Q8N393 782 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 UTP4Q969X6 686 aaKnown RBP11.72□□□□□ -0.53
SHMT2-219ENST00000555563 COQ7Q99807 217 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 ZNF556Q9HAH1 456 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 CMC2Q9NRP2 79 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 TBCCD1Q9NVR7 557 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 CYB5R1Q9UHQ9 305 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 KCNG2Q9UJ96 466 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 GRIP1Q9Y3R0 1128 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 COMMD3-BMI1R4GMX3 469 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 ABCA2Q9BZC7 2435 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 RTTNQ86VV8 2226 aa11.72□□□□□ -0.53
SHMT2-219ENST00000555563 IGHV4-61A0A0C4DH41 118 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 ZSCAN5BA6NJL1 495 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 FAM183AA6NL82 134 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 OSMP13725 252 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 ANXA8P13928 327 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 GIFP27352 417 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms