RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SCRN3Q0VDG4 424 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 AQP6Q13520 282 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 CRMP1Q14194 572 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 GGTLC2Q14390 218 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 NKPD1Q17RQ9 610 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 RSPO1Q2MKA7 263 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 SLC36A3Q495N2 470 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 ELFN2Q5R3F8 820 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 TMEM154Q6P9G4 183 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 CFAP77Q6ZQR2 320 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 SYT9Q86SS6 491 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 ZBTB46Q86UZ6 589 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 LNX2Q8N448 690 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 PAPD5Q8NDF8 572 aaKnown RBP9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 OR1F12Q8NHA8 337 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 UBASH3BQ8TF42 649 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 IPCEF1Q8WWN9 437 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 HCAR1Q9BXC0 346 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 BCL2L14Q9BZR8 327 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 RACGAP1Q9H0H5 632 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 MED20Q9H944 212 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 NTN4Q9HB63 628 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 EIF3KQ9UBQ5 218 aaKnown RBP9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 METRNQ9UJH8 293 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 POLR1DQ9Y2S0 133 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 GRIP1Q9Y3R0 1128 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 MALRD1Q5VYJ5 2156 aa9.9□□□□□ -0.83
CCDC88C-208ENST00000554165 LRP5LA4QPB2 252 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 E2F6O75461 281 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 ABHD16AO95870 558 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 HLA-DQA2P01906 255 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 POU1F1P28069 291 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 GGT2P36268 569 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 HIST1H3AP68431 136 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 CCL8P80075 99 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 CCNIQ14094 377 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 TMEM249Q2WGJ8 235 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 SPRNQ5BIV9 151 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 HIST2H3PS2Q5TEC6 136 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 SLC18B1Q6NT16 456 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 ACSM5Q6NUN0 579 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 DNM1P34Q6PK57 102 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 CD300LDQ6UXZ3 194 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 HIST2H3AQ71DI3 136 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 NAA40Q86UY6 237 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF511Q8NB15 262 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 KLF14Q8TD94 323 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 NEU4Q8WWR8 484 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 POP5Q969H6 163 aaKnown RBP9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 YIPF5Q969M3 257 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 UTP4Q969X6 686 aaKnown RBP9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 POM121Q96HA1 1249 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 SNX18Q96RF0 628 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 RBM4Q9BWF3 364 aaKnown RBP9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 BPESC1Q9GZL8 116 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 WDR76Q9H967 626 aa9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 HINT3Q9NQE9 182 aaKnown RBP9.89□□□□□ -0.83
CCDC88C-208ENST00000554165 LOC390937A0A1W2PQ73 354 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 ZSCAN5BA6NJL1 495 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 FAM183AA6NL82 134 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 C17orf100A8MU93 164 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 H3BN98 237 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 ICMTO60725 284 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 IGHV3-13P01766 116 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 CSF3P09919 207 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 IGHV4-31P0DP07 118 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 COX5BP10606 129 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 SLC25A16P16260 332 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 GSTM3P21266 225 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 USF1P22415 310 aaPredicted RBP9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 ANOS1P23352 680 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 IL2RGP31785 369 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 PRSS12P56730 875 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 LOXL1Q08397 574 aaPredicted RBP9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 COX10Q12887 443 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 TRIP10Q15642 601 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 TSTQ16762 297 aaKnown RBP9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF718Q3SXZ3 478 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 TMEM236Q5W0B7 351 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 RPL13AP3Q6NVV1 102 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 AMIGO2Q86SJ2 522 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF786Q8N393 782 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 PROKR2Q8NFJ6 384 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 OR2T33Q8NG76 320 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 OR10S1Q8NGN2 331 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 MAP6Q96JE9 813 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 PIMREGQ9BSJ6 248 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 SOX7Q9BT81 388 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 NMNAT2Q9BZQ4 307 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 MS4A5Q9H3V2 200 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 PNRC2Q9NPJ4 139 aaKnown RBP9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 DNAJB9Q9UBS3 223 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 CYB5R1Q9UHQ9 305 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 NDRG4Q9ULP0 352 aaKnown RBP9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 CACNG2Q9Y698 323 aa9.88□□□□□ -0.83
CCDC88C-208ENST00000554165 C5orf63A6NC05 138 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 ARRDC5A6NEK1 342 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 WNT9BO14905 357 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 SPRY3O43610 288 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 CDC14BO60729 498 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms