RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PTHP01270 115 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 SERPINA5P05154 406 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 SMIM18P0DKX4 95 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 EPXP11678 715 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF14P17017 642 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF32P17041 273 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 MYL12AP19105 171 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 CCKARP32238 428 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 NAA10P41227 235 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 TGM4P49221 684 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ETV1P50549 477 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 MMP16P51512 607 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 GRB2P62993 217 aaKnown RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 FAM27E3Q08E93 113 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 GPR50Q13585 617 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 RAB35Q15286 201 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 CCDC58Q4VC31 144 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ELFN2Q5R3F8 820 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 SYT6Q5T7P8 510 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 XAF1Q6GPH4 301 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF322Q6U7Q0 402 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 SEZ6L2Q6UXD5 910 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 COLCA1Q6ZS62 124 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 VASH1Q7L8A9 365 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 SSX6Q7RTT6 188 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 DCXRQ7Z4W1 244 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 LUZP2Q86TE4 346 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 TSPAN14Q8NG11 270 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 OR2AJ1Q8NGZ0 328 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 HSD17B8Q92506 261 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 FCGR1BQ92637 280 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 DCLRE1CQ96SD1 692 aaKnown RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 AMELYQ99218 206 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 SH3GL3Q99963 347 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ALG8Q9BVK2 526 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 MROQ9BYG7 248 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 OR2H1Q9GZK4 316 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 WNT5BQ9H1J7 359 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 RERGLQ9H628 205 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 EMC7Q9NPA0 242 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ACOT13Q9NPJ3 140 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 GALNT8Q9NY28 637 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 MRM2Q9UI43 246 aaKnown RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ERGIC3Q9Y282 383 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 METTL15A6NJ78 407 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 PRR32B1ATL7 298 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 EEF1E1-BLOC1S5C9J1V9 151 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 RER1O15258 196 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 OGG1O15527 345 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 EEF1E1O43324 174 aaKnown RBP8.34□□□□□ -1.07
LIMA1-211ENST00000552338 RAD51DO75771 328 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 APOC1P02654 83 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 MT-ND2P03891 347 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 MRPL3P09001 348 aaKnown RBP8.34□□□□□ -1.07
LIMA1-211ENST00000552338 SPARCP09486 303 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 TACSTD2P09758 323 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 IGFBP2P18065 325 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 CCR9P51686 369 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 HCCSP53701 268 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 WNT4P56705 351 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 RAB1AP62820 205 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 EIF2B1Q14232 305 aaKnown RBP8.34□□□□□ -1.07
LIMA1-211ENST00000552338 CDSNQ15517 529 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 GSG1Q2KHT4 349 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 TMEM53Q6P2H8 277 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 TMPRSS11AQ6ZMR5 421 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 CFAP77Q6ZQR2 320 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 Q6ZSR3 168 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 PRSS45Q7RTY3 260 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 LHFPL3Q86UP9 236 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF584Q8IVC4 421 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 ALDH16A1Q8IZ83 802 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 LRRC18Q8N456 261 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 KLHL36Q8N4N3 616 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 IL17RDQ8NFM7 739 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 OR10H4Q8NGA5 316 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 CA5BP1Q8WTZ4 195 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 SLAMF6Q96DU3 332 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 PELI1Q96FA3 418 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 POM121L2Q96KW2 1035 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 FOXN4Q96NZ1 517 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 KCNJ15Q99712 375 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 ATF6BQ99941 703 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 MND1Q9BWT6 205 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 MRPS26Q9BYN8 205 aaKnown RBP8.34□□□□□ -1.07
LIMA1-211ENST00000552338 KCNJ16Q9NPI9 418 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 CHCHD3Q9NX63 227 aaKnown RBP8.34□□□□□ -1.07
LIMA1-211ENST00000552338 BABAM2Q9NXR7 383 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 CLEC2DQ9UHP7 191 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 KLHDC2Q9Y2U9 406 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 RELNP78509 3460 aa8.34□□□□□ -1.07
LIMA1-211ENST00000552338 SPTBN1Q01082 2364 aaKnown RBP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 KALRNO60229 2985 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 A0A096LPE4 126 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 A0A1W2PPZ6 126 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 PLPP2O43688 288 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 APOL3O95236 402 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 TFAP2AP05549 437 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 RPSAP08865 295 aaKnown RBP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 CD53P19397 219 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms