RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286		A8MVM7	634 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	EFNA2	O43921	213 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	AHSA1	O95433	338 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	HEXB	P07686	556 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	ANOS1	P23352	680 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	CAPZA2	P47755	286 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	PNLIPRP2	P54317	469 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	GPR148	Q8TDV2	347 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	FCAMR	Q8WWV6	532 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	DCBLD2	Q96PD2	775 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	SLITRK2	Q9H156	845 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	CENPM	Q9NSP4	180 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	TAS2R4	Q9NYW5	299 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	KLHL9	Q9P2J3	617 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	LRP12	Q9Y561	859 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	OR2M5	A3KFT3	312 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	MS4A18	H0YCH9	400 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	GSTZ1	O43708	216 aa	Predicted RBP	13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	POU3F4	P49335	361 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	CCL7	P80098	99 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	SPOCK1	Q08629	439 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	GK2	Q14410	553 aa	Predicted RBP	13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	MS4A18	Q3C1V0	323 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	NKAIN1	Q4KMZ8	207 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	ANKRD37	Q7Z713	158 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	HAVCR1	Q96D42	359 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	ADAMTS9	Q9P2N4	1935 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	TRAV18	A0A075B6X5	111 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	MPTX1	A8MV57	137 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286		K7ESF4	209 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	ALOX12B	O75342	701 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	ZNF254	O75437	659 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	PPP3CB	P16298	524 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	SCRN3	Q0VDG4	424 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	PAPD4	Q6PIY7	484 aa	Known RBP	13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	GSG1L	Q6UXU4	331 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	GLDN	Q6ZMI3	551 aa	Predicted RBP	13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	GRINA	Q7Z429	371 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	RTN4RL2	Q86UN3	420 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	NAXD	Q8IW45	347 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	OR10G3	Q8NGC4	313 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	MIB2	Q96AX9	1013 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	TXNIP	Q9H3M7	391 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286	NOX3	Q9HBY0	568 aa		13.22	□□□□□ -0.29
DDX55-209	ENST00000542286		A0A1W2PNR3	127 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	GABARAP	H6UMI1	98 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286		H7C2Y5	167 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	EIF4E2	O60573	245 aa	Known RBP	13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	SCRG1	O75711	98 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	SNAPC5	O75971	98 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	DXO	O77932	396 aa	Known RBP	13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	OR2A4	O95047	310 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	EMC4	Q5J8M3	183 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	DCXR	Q7Z4W1	244 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	OR5M9	Q8NGP3	310 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	OR2A7	Q96R45	310 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	KLRF1	Q9NZS2	232 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	PURG	Q9UJV8	347 aa	Known RBP	13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	TRBV5-7	A0A0A0MS05	114 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	PRSS44	E7EML9	344 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286		F8W036	122 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	T	O15178	435 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	PDGFB	P01127	241 aa	Predicted RBP	13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	CD1A	P06126	327 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	CPN1	P15169	458 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	DCAF7	P61962	342 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	PCGF3	Q3KNV8	242 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	C2orf76	Q3KRA6	126 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	PRAMEF20	Q5VT98	475 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	CARD17	Q5XLA6	110 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	RNF144B	Q7Z419	303 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	NKD1	Q969G9	470 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	C5orf34	Q96MH7	638 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	CHRNA10	Q9GZZ6	450 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	MLX	Q9UH92	298 aa		13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	MRPS17	Q9Y2R5	130 aa	Known RBP	13.21	□□□□□ -0.29
DDX55-209	ENST00000542286	ADAMTS20	P59510	1910 aa		13.21	□□□□□ -0.3
DDX55-209	ENST00000542286	AHCTF1	Q8WYP5	2266 aa		13.21	□□□□□ -0.3
DDX55-209	ENST00000542286	FXYD6-FXYD2	A0A087WZ82	144 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	FTCDNL1	E5RQL4	147 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	CREBL2	O60519	120 aa	Predicted RBP	13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	OR2J2	O76002	312 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	HP	P00738	406 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	CSRP1	P21291	193 aa	Known RBP	13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	S100A12	P80511	92 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	FGL1	Q08830	312 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	IGSF11	Q5DX21	431 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	ZNF660	Q6AZW8	331 aa	Predicted RBP	13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	ZNF679	Q8IYX0	411 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	SPEM1	Q8N4L4	309 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	MCHR2	Q969V1	340 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	NKX6-2	Q9C056	277 aa	Predicted RBP	13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	FXYD6	Q9H0Q3	95 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	OCIAD1	Q9NX40	245 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	TMEM212	A6NML5	194 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286		G3V3Y1	287 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	RAMP1	O60894	148 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	CXCL12	P48061	93 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	EGR3	Q06889	387 aa		13.2	□□□□□ -0.3
DDX55-209	ENST00000542286	SLC18B1	Q6NT16	456 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms