RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MT-ND2P03891 347 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 LYNP07948 512 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 PPP3CBP16298 524 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 PCMT1P22061 227 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 PAX7P23759 505 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 GRNP28799 593 aaKnown RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 C21orf33P30042 268 aaPredicted RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 DCTDP32321 178 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 PEX19P40855 299 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 RPS7P62081 194 aaKnown RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 PSG4Q00888 419 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 EGR3Q06889 387 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 SCRN3Q0VDG4 424 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 GALEQ14376 348 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 RAB35Q15286 201 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 TSC22D1Q15714 1073 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 TAB1Q15750 504 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 C9orf135Q5VTT2 229 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 ZNF773Q6PK81 442 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 PRSS45Q7RTY3 260 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 DCXRQ7Z4W1 244 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 RAI1Q7Z5J4 1906 aaPredicted RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 LINC00346Q8IVM7 164 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 OR6N2Q8NGY6 317 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 OR52N1Q8NH53 320 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 SMAP2Q8WU79 429 aaPredicted RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 OTULINQ96BN8 352 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 S100PBPQ96BU1 408 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 TMEM80Q96HE8 168 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 COQ7Q99807 217 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 ACTR6Q9GZN1 396 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 MOV10Q9HCE1 1003 aaKnown RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 NPAP1Q9NZP6 1156 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 H2AFY2Q9P0M6 372 aaPredicted RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 MRM2Q9UI43 246 aaKnown RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 EXOSC1Q9Y3B2 195 aaKnown RBP9.18□□□□□ -0.94
VPS33A-204ENST00000540669 TMEM14AQ9Y6G1 99 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 FBN2P35556 2912 aa9.18□□□□□ -0.94
VPS33A-204ENST00000540669 A0A096LPE4 126 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 A0A1W2PPZ6 126 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 NKX2-6A6NCS4 301 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 FAM90A27PA6NNH2 459 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 ZNF878C9JN71 531 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 C16orf97H3BN30 126 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 PHYHO14832 338 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 RER1O15258 196 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 SULT1C4O75897 302 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 FARS2O95363 451 aaKnown RBP9.17□□□□□ -0.94
VPS33A-204ENST00000540669 HLA-HP01893 362 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 SPARCP09486 303 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 EPXP11678 715 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 CBR1P16152 277 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 ANOS1P23352 680 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 LOXP28300 417 aaPredicted RBP9.17□□□□□ -0.94
VPS33A-204ENST00000540669 ETV1P50549 477 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 PCBD1P61457 104 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 HGFACQ04756 655 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 ACSM1Q08AH1 577 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 SGCAQ16586 387 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 SLC36A2Q495M3 483 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 XAF1Q6GPH4 301 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 FDX2Q6P4F2 183 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 CORO6Q6QEF8 472 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 COLCA1Q6ZS62 124 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 SLC16A14Q7RTX9 510 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 MDP1Q86V88 176 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 ZNF540Q8NDQ6 660 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 CPEB3Q8NE35 698 aaKnown RBP9.17□□□□□ -0.94
VPS33A-204ENST00000540669 GJC3Q8NFK1 279 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 OR10H5Q8NGA6 315 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 ASB17Q8WXJ9 295 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 C1orf198Q9H425 327 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 RERGLQ9H628 205 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 SEC61A2Q9H9S3 476 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 KCNJ16Q9NPI9 418 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 SCN3BQ9NY72 215 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 ERVK-18Q9QC07 812 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 FBXL3Q9UKT7 428 aa9.17□□□□□ -0.94
VPS33A-204ENST00000540669 CRYBG3Q68DQ2 2970 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 TACC2O95359 2948 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 SGCEO43556 437 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 RGS10O43665 173 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 ZNF254O75437 659 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 LALBAP00709 142 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 PTHP01270 115 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 IGLV3-1P01715 115 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 SERPINA5P05154 406 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 PATE4P0C8F1 98 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 COX6B1P14854 86 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 ZNF823P16415 610 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 IL32P24001 234 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 ARR3P36575 388 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 HCCSP53701 268 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 CDH15P55291 814 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 PSMA6P60900 246 aaKnown RBP9.16□□□□□ -0.94
VPS33A-204ENST00000540669 ACTA2P62736 377 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 ACTG2P63267 376 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 PIGFQ07326 219 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 GSG1Q2KHT4 349 aa9.16□□□□□ -0.94
VPS33A-204ENST00000540669 TUSC1Q2TAM9 212 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms