RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 C13orf42A0A1B0GVH6 325 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 OR6C76A6NM76 312 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 OR2AT4A6NND4 320 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 MPTX1A8MV57 137 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 SULT2B1O00204 365 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 ICOSLGO75144 302 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 ATG12O94817 140 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 IGFBP4P22692 258 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 ZNF117Q03924 483 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 SHEQ5VZ18 495 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 RAB12Q6IQ22 244 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 ZNF584Q8IVC4 421 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 LINC00346Q8IVM7 164 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 CHST4Q8NCG5 386 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 OR13C3Q8NGS6 347 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 GAREM1Q9H706 876 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 CKLFQ9UBR5 152 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 CLDN4O14493 209 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 ABCD4O14678 606 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 PAN3Q58A45 887 aaKnown RBP18.2■□□□□ 0.5
TMEM260-203ENST00000539559 SLC18B1Q6NT16 456 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 ARMC6Q6NXE6 501 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 FJX1Q86VR8 437 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 C19orf47Q8N9M1 422 aaKnown RBP18.2■□□□□ 0.5
TMEM260-203ENST00000539559 ZC3H10Q96K80 434 aaKnown RBP18.2■□□□□ 0.5
TMEM260-203ENST00000539559 PRR13Q9NZ81 148 aa18.2■□□□□ 0.5
TMEM260-203ENST00000539559 MRPS33Q9Y291 106 aaKnown RBP18.2■□□□□ 0.5
TMEM260-203ENST00000539559 A0A1B0GW55 424 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 OR2F2O95006 317 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DUX4L2P0CJ85 424 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DUX4L3P0CJ86 424 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DUX4L4P0CJ87 422 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DUX4L5P0CJ88 424 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DUX4L6P0CJ89 424 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DUX4L7P0CJ90 424 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 CXCR1P25024 350 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DNASE1L1P49184 302 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 HHEXQ03014 270 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 FGL1Q08830 312 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 OR2F1Q13607 317 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 ACOT7LQ6ZUV0 252 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 ZNF440Q8IYI8 595 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DNTTIP1Q9H147 329 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 DUX4Q9UBX2 424 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 EIF1AYO14602 144 aaKnown RBP18.19■□□□□ 0.5
TMEM260-203ENST00000539559 SIGLEC6O43699 453 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 GUSBP08236 651 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 IFI6P09912 130 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 ZBTB25P24278 435 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 IL13RA1P78552 427 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 EMC4Q5J8M3 183 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 ADGRE4PQ86SQ3 457 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 TRAPPC6BQ86SZ2 158 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 ROBO4Q8WZ75 1007 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 MAP3K3Q99759 626 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 ZNF175Q9Y473 711 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 RP1P56715 2156 aa18.19■□□□□ 0.5
TMEM260-203ENST00000539559 TCRBV21S2A2A0A5A6 115 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 PRSS37A4D1T9 235 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 OR14I1A6ND48 311 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 B4DGG1 531 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 ACTL6AO96019 429 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 BGLAPP02818 100 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 PRKXP51817 358 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 ELOCQ15369 112 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 TEX30Q5JUR7 227 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 TMEM71Q6P5X7 295 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 C8orf44Q96CB5 159 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 EDEM2Q9BV94 578 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 OR11A1Q9GZK7 315 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 GMEB2Q9UKD1 530 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 COA3Q9Y2R0 106 aaPredicted RBP18.18■□□□□ 0.5
TMEM260-203ENST00000539559 CD2P06729 351 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 MELTFP08582 738 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 HLA-DOBP13765 273 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 PGAM2P15259 253 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 CD96P40200 585 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 RIDAP52758 137 aaKnown RBP18.18■□□□□ 0.5
TMEM260-203ENST00000539559 PLEKHN1Q494U1 663 aaPredicted RBP18.18■□□□□ 0.5
TMEM260-203ENST00000539559 RNASE10Q5GAN6 216 aaKnown RBP18.18■□□□□ 0.5
TMEM260-203ENST00000539559 NUDT9Q9BW91 350 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 SELENOIQ9C0D9 397 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 SLC17A5Q9NRA2 495 aa18.18■□□□□ 0.5
TMEM260-203ENST00000539559 COL4A2P08572 1712 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 TMEM218A2RU14 115 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 C9orf170A2RU37 121 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 FLI1Q01543 452 aaPredicted RBP18.17■□□□□ 0.5
TMEM260-203ENST00000539559 ZP2Q05996 745 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 PRTGQ2VWP7 1150 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 LYG2Q86SG7 212 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 CATSPERDQ86XM0 798 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 MLXQ9UH92 298 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 MMP17Q9ULZ9 603 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 PRUNE2Q8WUY3 3088 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 LOC107986453A0A1B0GWG9 222 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 C5orf51A6NDU8 294 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 H7C2Y5 167 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 P2RY10O00398 339 aa18.17■□□□□ 0.5
TMEM260-203ENST00000539559 ERCC1P07992 297 aaPredicted RBP18.17■□□□□ 0.5
TMEM260-203ENST00000539559 SLC25A4P12235 298 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms