RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PLEK2Q9NYT0 353 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 KCNG2Q9UJ96 466 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 NSD1Q96L73 2696 aaPredicted RBP11.12□□□□□ -0.63
VPS28-216ENST00000533806 IGHV4-30-2A0A087WSY4 118 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 H3BNX3 289 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 SURF4O15260 269 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 DOK2O60496 412 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 CIB2O75838 187 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 FCGR1AP12314 374 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 CCNOP22674 350 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 TUBG1P23258 451 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 HTR5AP47898 357 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 CENPAP49450 140 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 DSCR9P59020 149 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 KPNB1Q14974 876 aaKnown RBP11.11□□□□□ -0.63
VPS28-216ENST00000533806 ELFN2Q5R3F8 820 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 MBNL2Q5VZF2 373 aaKnown RBP11.11□□□□□ -0.63
VPS28-216ENST00000533806 KDM4DQ6B0I6 523 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 CFAP77Q6ZQR2 320 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 COLCA1Q6ZS62 124 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 AMIGO2Q86SJ2 522 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 HIPK1Q86Z02 1210 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 ATG16L2Q8NAA4 619 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 OR51L1Q8NGJ5 315 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 OR10S1Q8NGN2 331 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 OR9Q1Q8NGQ5 310 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 OR1J1Q8NGS3 322 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 SYNPRQ8TBG9 265 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 C10orf105Q8TEF2 133 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 SLC7A6Q92536 515 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 COQ7Q99807 217 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 SMR3AQ99954 134 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 VRK1Q99986 396 aaPredicted RBP11.11□□□□□ -0.63
VPS28-216ENST00000533806 HDHD2Q9H0R4 259 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 GABARAPL1Q9H0R8 117 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 OR51B6Q9H340 312 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 GSX1Q9H4S2 264 aaPredicted RBP11.11□□□□□ -0.63
VPS28-216ENST00000533806 SLC25A19Q9HC21 320 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 TUBG2Q9NRH3 451 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 EIF3KQ9UBQ5 218 aaKnown RBP11.11□□□□□ -0.63
VPS28-216ENST00000533806 DUSP13Q9UII6 198 aa11.11□□□□□ -0.63
VPS28-216ENST00000533806 RIIAD1A6NNX1 92 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 VWC2LB2RUY7 222 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 G3V2T6 193 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 H3BSA7 217 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 M0R233 179 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 IFNGP01579 166 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 GYPBP06028 91 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 LCKP06239 509 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 DBHP09172 617 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 POU1F1P28069 291 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 MPV17P39210 176 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 ALDH3B1P43353 468 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 MMP15P51511 669 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 CRISP1P54107 249 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 KLF3P57682 345 aaPredicted RBP11.1□□□□□ -0.63
VPS28-216ENST00000533806 EFNB1P98172 346 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 MAD2L1BPQ15013 274 aaPredicted RBP11.1□□□□□ -0.63
VPS28-216ENST00000533806 TMEM236Q5W0B7 351 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 UNQ6126/PRO20091Q6UXV3 157 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 BIVMQ86UB2 503 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 ZNF511Q8NB15 262 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 PROKR2Q8NFJ6 384 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 ABHD4Q8TB40 342 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 SLC25A40Q8TBP6 338 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 KLF14Q8TD94 323 aaPredicted RBP11.1□□□□□ -0.63
VPS28-216ENST00000533806 NEU4Q8WWR8 484 aaPredicted RBP11.1□□□□□ -0.63
VPS28-216ENST00000533806 CENPNQ96H22 339 aaPredicted RBP11.1□□□□□ -0.63
VPS28-216ENST00000533806 MAP6Q96JE9 813 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 DCLRE1CQ96SD1 692 aaKnown RBP11.1□□□□□ -0.63
VPS28-216ENST00000533806 REG4Q9BYZ8 158 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 OR2J1Q9GZK6 312 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 RAB1BQ9H0U4 201 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 MS4A5Q9H3V2 200 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 POFUT1Q9H488 388 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 MED20Q9H944 212 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 WDR76Q9H967 626 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 MARCH7Q9H992 704 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 ELOVL3Q9HB03 270 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 PAPOLBQ9NRJ5 636 aaKnown RBP11.1□□□□□ -0.63
VPS28-216ENST00000533806 TMEFF2Q9UIK5 374 aaPredicted RBP11.1□□□□□ -0.63
VPS28-216ENST00000533806 STARD10Q9Y365 291 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 COMMD3-BMI1R4GMX3 469 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 CSPG4Q6UVK1 2322 aa11.1□□□□□ -0.63
VPS28-216ENST00000533806 TLN2Q9Y4G6 2542 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 TVP23AA6NH52 213 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 FAM183AA6NL82 134 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 RNF223E7ERA6 249 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 J3QW42 95 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 MITFO75030 526 aaPredicted RBP11.09□□□□□ -0.63
VPS28-216ENST00000533806 HLA-DQA2P01906 255 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 HMGN1P05114 100 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 ZNF3P17036 446 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 EPHA2P29317 976 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 FMO3P31513 532 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 OTX1P32242 354 aaPredicted RBP11.09□□□□□ -0.63
VPS28-216ENST00000533806 RPS27P42677 84 aaKnown RBP11.09□□□□□ -0.63
VPS28-216ENST00000533806 PPP1CBP62140 327 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 ESRRGP62508 458 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 KRTAP1-1Q07627 177 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms