RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MAPK8IP3Q9UPT6 1336 aa2.9□□□□□ -1.95
CD44-223ENST00000526553 TMEM131LA2VDJ0 1609 aa2.9□□□□□ -1.95
CD44-223ENST00000526553 TRPM2O94759 1503 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 A0A1B0GVI7 797 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 PEX7O00628 323 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 SCAMP2O15127 329 aaKnown RBP2.89□□□□□ -1.95
CD44-223ENST00000526553 CLDN11O75508 207 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 ATRNO75882 1429 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 C6orf47O95873 294 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 UBCP0CG48 685 aaKnown RBP2.89□□□□□ -1.95
CD44-223ENST00000526553 OR1G1P47890 313 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 SH3BGRP55822 239 aaPredicted RBP2.89□□□□□ -1.95
CD44-223ENST00000526553 IRX3P78415 501 aaPredicted RBP2.89□□□□□ -1.95
CD44-223ENST00000526553 ILKQ13418 452 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 FZD2Q14332 565 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 PRPSAP1Q14558 356 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 TRAM2Q15035 370 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 NKAIN1Q4KMZ8 207 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 HIKESHIQ53FT3 197 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 SOHLH1Q5JUK2 328 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 OR52W1Q6IF63 320 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 VTCN1Q7Z7D3 282 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 RALGPS2Q86X27 583 aaPredicted RBP2.89□□□□□ -1.95
CD44-223ENST00000526553 TMEM61Q8N0U2 210 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 PRELID2Q8N945 189 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 C20orf203Q8NBC4 194 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 HSD17B11Q8NBQ5 300 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 OR2A1Q8NGT9 310 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 OR6X1Q8NH79 312 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 OR5K2Q8NHB8 316 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 GEMIN6Q8WXD5 167 aaKnown RBP2.89□□□□□ -1.95
CD44-223ENST00000526553 MYDGFQ969H8 173 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 C9orf72Q96LT7 481 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 SERPINB12Q96P63 405 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 RASL11BQ9BPW5 248 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 LZTS2Q9BRK4 669 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 LCE3DQ9BYE3 92 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 ACTR3CQ9C0K3 210 aaPredicted RBP2.89□□□□□ -1.95
CD44-223ENST00000526553 NEUROG2Q9H2A3 272 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 EML4Q9HC35 981 aaKnown RBP2.89□□□□□ -1.95
CD44-223ENST00000526553 NCOA3Q9Y6Q9 1424 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 MROH7-TTC4A0A0A0MT08 1334 aa2.89□□□□□ -1.95
CD44-223ENST00000526553 RGPD1P0DJD0 1748 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 BLMP54132 1417 aaPredicted RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 MYOM3Q5VTT5 1437 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 ERBINQ96RT1 1412 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 IGKV1D-13A0A0B4J2D9 117 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 A0A0G2JLM5 398 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 KIR2DL5BA0A0G2JN68 375 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 KIR2DL5BA0A0G2JPC4 375 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 ZNF816-ZNF321PA0A0X1KG74 233 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 GJE1A6NN92 205 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 FAM25EA8MYX2 175 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 SERPINE2P07093 398 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 GIPP09681 153 aaPredicted RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 ACSM4P0C7M7 580 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CT45A6P0DMU7 189 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CT45A5P0DMU8 189 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CT45A7P0DMV0 189 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 IGHV3-43DP0DP04 118 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 IGKV1-13P0DP09 117 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 ZNF250P15622 560 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CRISP2P16562 243 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 BTCP35070 178 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 LONP1P36776 959 aaKnown RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 TMED1Q13445 227 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 PSMD5Q16401 504 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 SGCAQ16586 387 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 RFX4Q33E94 735 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 HSP90AA4PQ58FG1 418 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 TFDP3Q5H9I0 405 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CT45A1Q5HYN5 189 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 PAGE3Q5JUK9 113 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CCNJQ5T5M9 372 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CYB5R2Q6BCY4 276 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 FRMPD2BQ6IN97 320 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 H3F3CQ6NXT2 135 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 LINC00523Q86TU6 105 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 THOC6Q86W42 341 aaKnown RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 KIR2DL5AQ8N109 375 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 SUMF2Q8NBJ7 301 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CCDC54Q8NEL0 328 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 KIR2DL5BQ8NHK3 375 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CT45A3Q8NHU0 189 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 LKAAEAR1Q8TD35 194 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 IL22RA2Q969J5 263 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 RPUSD4Q96CM3 377 aaKnown RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 AURKBQ96GD4 344 aaPredicted RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 UCK2Q9BZX2 261 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 RPF2Q9H7B2 306 aaKnown RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 PXMP2Q9NR77 195 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 CTPS2Q9NRF8 586 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 AHSPQ9NZD4 102 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 MYEF2Q9P2K5 600 aaKnown RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 COL22A1Q8NFW1 1626 aaPredicted RBP2.88□□□□□ -1.95
CD44-223ENST00000526553 PTPN23Q9H3S7 1636 aa2.88□□□□□ -1.95
CD44-223ENST00000526553 PIK3R4Q99570 1358 aa2.87□□□□□ -1.95
CD44-223ENST00000526553 ANKRD30AQ9BXX3 1397 aa2.87□□□□□ -1.95
CD44-223ENST00000526553 UNC13BO14795 1591 aa2.87□□□□□ -1.95
CD44-223ENST00000526553 RGPD8O14715 1765 aaPredicted RBP2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms