RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DCXRQ7Z4W1 244 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 FTMTQ8N4E7 242 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 PAQR8Q8TEZ7 354 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 ROPN1LQ96C74 230 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 WBP1Q96G27 269 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 MARS2Q96GW9 593 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 TMEM19Q96HH6 336 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 IKZF5Q9H5V7 419 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF703Q9H7S9 590 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 AMBNQ9NP70 447 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DUX4Q9UBX2 424 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 PQLC2LA1A4F0 135 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 RFPL4AA6NLU0 287 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 C11orf98E9PRG8 122 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 RFPL4AL1F8VTS6 287 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 AQP8O94778 261 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 DIRAS1O95057 198 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 IGHV2-70P01814 119 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 RAF1P04049 648 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 DDTP30046 118 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 GCH1P30793 250 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 FAM27E3Q08E93 113 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 FOXO1Q12778 655 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 BAK1Q16611 211 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 HACD4Q5VWC8 232 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 THNSL2Q86YJ6 484 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ZFP62Q8NB50 900 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 POGLUT1Q8NBL1 392 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 OR56A1Q8NGH5 318 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 OR8D4Q8NGM9 314 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ST7LQ8TDW4 575 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 RDH12Q96NR8 316 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 SDF2Q99470 211 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 RNF121Q9H920 327 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 MEAF6Q9HAF1 191 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 KCNK7Q9Y2U2 307 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 A0A1W2PQ09 198 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 FRG2CA6NGY1 282 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 CDRT1O95170 752 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 FARS2O95363 451 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 AKR1C3P42330 323 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 SUCLG1P53597 346 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 CDK6Q00534 326 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF117Q03924 483 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 KLF10Q13118 480 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 RNASE12Q5GAN4 147 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 EMC4Q5J8M3 183 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 FNDC7Q5VTL7 733 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ADAM5Q6NVV9 412 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 VWA1Q6PCB0 445 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 LIX1LQ8IVB5 337 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 OR2L13Q8N349 312 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ST6GALNAC3Q8NDV1 305 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 OR8J2Q8NGG1 315 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 SPPL2AQ8TCT8 520 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 OSTF1Q92882 214 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 MRPL37Q9BZE1 423 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 TOLLIPQ9H0E2 274 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 PROK2Q9HC23 129 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 UBQLN4Q9NRR5 601 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 RPS6KB2Q9UBS0 482 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 GPR45Q9Y5Y3 372 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 CPSF4LA6NMK7 179 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 CLCA1A8K7I4 914 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 M0R3H8 397 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 MRASO14807 208 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 AGPAT2O15120 278 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 SIAH2O43255 324 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 SNNO75324 88 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 CBR3O75828 277 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 COX6B1P14854 86 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 CEACAM7Q14002 265 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 GINS1Q14691 196 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 NHSL2Q5HYW2 709 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF311Q5JNZ3 666 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ATG4DQ86TL0 474 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 WFDC8Q8IUA0 241 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 MS4A15Q8N5U1 240 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 SYT14Q8NB59 555 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 CCDC54Q8NEL0 328 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 NEIL3Q8TAT5 605 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ACOT11Q8WXI4 607 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 MARVELD3Q96A59 401 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 RFT1Q96AA3 541 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 DIRAS2Q96HU8 199 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ITCHQ96J02 903 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 HINT2Q9BX68 163 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 ANKRD60Q9BZ19 345 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 SMPD3Q9NY59 655 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 CNIH4Q9P003 139 aa7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 EXOGQ9Y2C4 368 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 NIPBLQ6KC79 2804 aaeCLIP7.05□□□□□ -1.28
LIMCH1-219ENST00000514096 FN1P02751 2386 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 GPR31O00270 319 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 NXPH2O95156 264 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 PTBP3O95758 552 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 CLDN1O95832 211 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 ONECUT2O95948 504 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 C1QBP02746 253 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 RPL3P39023 403 aaKnown RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms