RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 ARRDC2Q8TBH0 407 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 HRASLS5Q96KN8 279 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CPPED1Q9BRF8 314 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 RNF167Q9H6Y7 350 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 LHX6Q9UPM6 363 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ENTPD2Q9Y5L3 495 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 RGS13O14921 159 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 DNPH1O43598 174 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 OR8G3PP0DMU2 310 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 PNMTP11086 282 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ADRA2CP18825 462 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CR2P20023 1033 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ABCD3P28288 659 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 NKX2-1P43699 371 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CDC34P49427 236 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ELOBQ15370 118 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 NSDHLQ15738 373 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CYB5R2Q6BCY4 276 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 FIGLAQ6QHK4 219 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 LRRTM3Q86VH5 581 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 NLGN4YQ8NFZ3 816 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 OR2M7Q8NG81 312 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 OR2AK2Q8NG84 335 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 RAB24Q969Q5 203 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC25A46Q96AG3 418 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 BMFQ96LC9 184 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 RSG1Q9BU20 258 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC17A9Q9BYT1 436 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF835Q9Y2P0 537 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 DNAJC13O75165 2243 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 GPR171O14626 319 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 PHF1O43189 567 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 AIFM1O95831 613 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ID4P47928 161 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 C19orf57Q0VDD7 668 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 PLGLAQ15195 96 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 PRAMEF8Q5VWM4 474 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 PRAMEF7Q5VXH5 474 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CPEB2Q7Z5Q1 589 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 GALNT16Q8N428 558 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 RBMXL3Q8N7X1 1067 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 DVL3Q92997 716 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 TSACCQ96A04 125 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SEH1LQ96EE3 360 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ZIC5Q96T25 663 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 NUDT22Q9BRQ3 303 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 NOX4Q9NPH5 578 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CLEC2DQ9UHP7 191 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 WASHC3Q9Y3C0 194 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 KIR2DS5A0A0G2JLQ3 304 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 A0A0G2JNG1 304 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CDC14CA4D256 554 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 KIR2DS3K7RE56 304 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SMAD6O43541 496 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 OR5AL1P0C617 328 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 DLX2Q07687 328 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 MELKQ14680 651 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 KIR2DS5Q14953 304 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ATP6V1FQ16864 119 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SAPCD1Q5SSQ6 148 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 FAM69BQ5VUD6 431 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 FUNDC1Q8IVP5 155 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 EIF4E3Q8N5X7 224 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 ABHD4Q8TB40 342 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC39A7Q92504 469 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 FGF13Q92913 245 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 MUCL1Q96DR8 90 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 UBL7Q96S82 380 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 NPAS1Q99742 590 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 TWSG1Q9GZX9 223 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 DYNLRB1Q9NP97 96 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 AKIP1Q9NQ31 210 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 PITPNC1Q9UKF7 332 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SNX11Q9Y5W9 270 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 OR52A4PA6NMU1 304 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PTGESO14684 152 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF28P17035 718 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ERVFRD-1P60508 538 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 MYBPHQ13203 477 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 WDR88Q6ZMY6 472 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 DGAT2L6Q6ZPD8 337 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ACOT4Q8N9L9 421 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 KCNE4Q8WWG9 221 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 DIO2Q92813 273 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 NIPSNAP1Q9BPW8 284 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 GINS3Q9BRX5 216 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 GPR61Q9BZJ8 451 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF160Q9HCG1 818 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR52A1Q9UKL2 312 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PRSS21Q9Y6M0 314 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 MYH9P35579 1960 aaKnown RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 CCDC187A0A096LP49 1063 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PRRG2O14669 202 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ST8SIA5O15466 376 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR7C2O60412 319 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 CRYBA1P05813 215 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 CHRM4P08173 479 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 DBHP09172 617 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms