RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 FAM53BQ14153 422 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF141Q15928 474 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 PAN3Q58A45 887 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 TMEM88Q6PEY1 159 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 TMEM200AQ86VY9 491 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 RFLNBQ8N5W9 214 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 APOBEC4Q8WW27 367 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 FGF14Q92915 247 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 HGDQ93099 445 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 TAAR8Q969N4 342 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 SLAMF6Q96DU3 332 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF649Q9BS31 505 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 TMEM231Q9H6L2 316 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 NTMQ9P121 344 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 CA14Q9ULX7 337 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 SGCEO43556 437 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 HTRA4P83105 476 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 PSG6Q00889 435 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 PRTGQ2VWP7 1150 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 C11orf87Q6NUJ2 197 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 OR51E1Q8TCB6 317 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 HSD17B8Q92506 261 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 TCEAL3Q969E4 200 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 MOGAT1Q96PD6 335 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 NICN1Q9BSH3 213 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 CHRDQ9H2X0 955 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 LMAN1LQ9HAT1 526 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 EXOSC3Q9NQT5 275 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 FAM212BQ9NTI7 297 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 CCDC88CQ9P219 2028 aa7.61□□□□□ -1.19
LIMCH1-216ENST00000512820 IGHV3-20A0A0C4DH32 117 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 TMEM272A0A1B0GTI8 110 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 AVPR2P30518 371 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 HSF1Q00613 529 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 BAMBIQ13145 260 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 EXOSC6Q5RKV6 272 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 MRGPREQ86SM8 312 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF695Q8IW36 515 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 BAP18Q8IXM2 172 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 CLRN3Q8NCR9 226 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 OR11H4Q8NGC9 324 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 MARCH1Q8TCQ1 289 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 CMSS1Q9BQ75 279 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 TCEAL2Q9H3H9 227 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 SLC17A5Q9NRA2 495 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 WIF1Q9Y5W5 379 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 C4orf51C9J302 202 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 TXNL1O43396 289 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 ZFAND5O76080 213 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 EML2O95834 649 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 PI3P19957 117 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 CNR1P21554 472 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 MFGE8Q08431 387 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 PDZK1IP1Q13113 114 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 VWA2Q5GFL6 755 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 AKR1C8PQ5T2L2 129 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 PDSS1Q5T2R2 415 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 KCNRGQ8N5I3 272 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 TSPAN32Q96QS1 320 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 CNTNAP3Q9BZ76 1288 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 TNS1Q9HBL0 1735 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 FRRS1LQ9P0K9 344 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF223Q9UK11 482 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 WNT11O96014 354 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 GABRA1P14867 456 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 ALOX5APP20292 161 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 SCAND1P57086 179 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 DHRS2Q13268 280 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 MPPED2Q15777 294 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 GALNT16Q8N428 558 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 LRRC18Q8N456 261 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 ESX1Q8N693 406 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 CA10Q9NS85 328 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 FAM86C1Q9NVL1 165 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 MED29Q9NX70 200 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 SUSD2Q9UGT4 822 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 OPN4Q9UHM6 478 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 LRP12Q9Y561 859 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 TCRBV16S1A1N1A0A5B0 115 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 H0YIG0 161 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 EPHA4P54764 986 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 MTCP1P56278 107 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 CLDN17P56750 224 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 CBLN3Q6UW01 205 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 ANKRD9Q96BM1 317 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 PGLYRP3Q96LB9 341 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 C10orf90Q96M02 699 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 SPIN2AQ99865 258 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 SPIN2BQ9BPZ2 258 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 PLA2G2FQ9BZM2 168 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 KCNK15Q9H427 330 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 TAF9BQ9HBM6 251 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 FGF21Q9NSA1 209 aa7.6□□□□□ -1.19
LIMCH1-216ENST00000512820 SPINT1O43278 529 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 C14orf28Q4W4Y0 310 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 ZFP82Q8N141 532 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 EXD3Q8N9H8 876 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 SUMF2Q8NBJ7 301 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms