RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 HIST2H3AQ71DI3 136 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 THAP5Q7Z6K1 395 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 TMEM200AQ86VY9 491 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 CDC20BQ86Y33 519 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 SLC35F2Q8IXU6 374 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 ZNF295-AS1Q8N0V1 137 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 PAQR4Q8N4S7 273 aaPredicted RBP10.32□□□□□ -0.76
CUX1-210ENST00000497815 KBTBD8Q8NFY9 601 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 OR10H4Q8NGA5 316 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 OR4F15Q8NGB8 312 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 OR1F12Q8NHA8 337 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 OTOSQ8NHW6 89 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 SLC7A6Q92536 515 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 SLAMF6Q96DU3 332 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 CNBD2Q96M20 576 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 ABHD6Q9BV23 337 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 RASSF4Q9H2L5 321 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 OR51B6Q9H340 312 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 C1orf198Q9H425 327 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 CDH20Q9HBT6 801 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 LAMP5Q9UJQ1 280 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 POU2F3Q9UKI9 436 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 RNF115Q9Y4L5 304 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 HSPE1-MOB4S4R3N1 261 aa10.32□□□□□ -0.76
CUX1-210ENST00000497815 LOC100509620A0A075B734 347 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 IGHV2OR16-5A0A0B4J2B6 119 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 OR6C6A6NF89 314 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 PSMD9O00233 223 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 SYNGR3O43761 229 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 CTAG2O75638 210 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 LYNP07948 512 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 DBHP09172 617 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 MYF6P23409 242 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 GALK2Q01415 458 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 TLE4Q04727 773 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 POU4F2Q12837 409 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 CDK5R2Q13319 367 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 TMED1Q13445 227 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 TAF13Q15543 124 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 C3orf36Q3SXR2 165 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 KRT80Q6KB66 452 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 ZNF704Q6ZNC4 412 aaPredicted RBP10.31□□□□□ -0.76
CUX1-210ENST00000497815 RFLNBQ8N5W9 214 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 ZNF454Q8N9F8 522 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 OR10S1Q8NGN2 331 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 OR1J2Q8NGS2 313 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 ST7LQ8TDW4 575 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 NEUROG1Q92886 237 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 LGALS12Q96DT0 336 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 POM121L2Q96KW2 1035 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 ATF6BQ99941 703 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 COPS4Q9BT78 406 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 ANKRD60Q9BZ19 345 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 YIPF3Q9GZM5 350 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 HDHD2Q9H0R4 259 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 PNRC2Q9NPJ4 139 aaKnown RBP10.31□□□□□ -0.76
CUX1-210ENST00000497815 HAO2Q9NYQ3 351 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 RAB26Q9ULW5 256 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 COPS3Q9UNS2 423 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 RPL36Q9Y3U8 105 aaKnown RBP10.31□□□□□ -0.76
CUX1-210ENST00000497815 ATP23Q9Y6H3 246 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 COL12A1Q99715 3063 aa10.31□□□□□ -0.76
CUX1-210ENST00000497815 ADGRG4Q8IZF6 3080 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 FASNP49327 2511 aaKnown RBP10.3□□□□□ -0.76
CUX1-210ENST00000497815 ZNF670-ZNF695F2Z2N8 137 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 FAM157BP0CG42 384 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 ZNF35P13682 527 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 CXCR4P61073 352 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 LAIR2Q6ISS4 152 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 VHLLQ6RSH7 139 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 LRRN1Q6UXK5 716 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 IL17RDQ8NFM7 739 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 BPIFB6Q8NFQ5 453 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 COQ7Q99807 217 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 RHNO1Q9BSD3 238 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 CLEC4MQ9H2X3 399 aaPredicted RBP10.3□□□□□ -0.76
CUX1-210ENST00000497815 GRIP1Q9Y3R0 1128 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 TMEM14AQ9Y6G1 99 aa10.3□□□□□ -0.76
CUX1-210ENST00000497815 SPTBN1Q01082 2364 aaKnown RBP10.29□□□□□ -0.76
CUX1-210ENST00000497815 A0A1W2PPR1 153 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 A0A1W2PQL4 384 aaPredicted RBP10.29□□□□□ -0.76
CUX1-210ENST00000497815 PRR32B1ATL7 298 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 SHISA9B4DS77 424 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 ZNF878C9JN71 531 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 F5H5K5 113 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 MAGEB4O15481 346 aaPredicted RBP10.29□□□□□ -0.76
CUX1-210ENST00000497815 XPNPEP2O43895 674 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 FAM20BO75063 409 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 H2BFMP0C1H6 154 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 COX5BP10606 129 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 ALOX5APP20292 161 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 HSD11B1P28845 292 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 WNT5AP41221 380 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 PRKXP51817 358 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 HGFACQ04756 655 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 ECH1Q13011 328 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 SNTB2Q13425 540 aaKnown RBP10.29□□□□□ -0.76
CUX1-210ENST00000497815 SSX6Q7RTT6 188 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 KRT77Q7Z794 578 aa10.29□□□□□ -0.76
CUX1-210ENST00000497815 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms